File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs zr2096_10_s1_R1_val_1_bismark_bt2_pe.bam 17448883 9282636 4524985 3641262 0 323003 8959633 162550688 15623053 6899821 964793 34745591 4172504 100144926 zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam 28603346 8273828 17321484 3008033 1 995382 7278446 122983889 10626266 4577584 804585 24001874 6097998 76875582 zr2096_2_s1_R1_val_1_bismark_bt2_pe.bam 30325606 15247790 8686774 6391039 3 1127798 14119992 217855622 20356245 8346961 1293967 46525869 8161912 133170668 zr2096_3_s1_R1_val_1_bismark_bt2_pe.bam 29548753 15542347 7362526 6643878 2 734845 14807502 267693368 29337022 8890935 1506507 57632709 6531799 163794396 zr2096_4_s1_R1_val_1_bismark_bt2_pe.bam 23970516 12995899 5579694 5394921 2 332717 12663182 202414211 16972342 8759183 1072413 42789465 5847499 126973309 zr2096_5_s1_R1_val_1_bismark_bt2_pe.bam 31503281 16377055 8772590 6353631 5 841786 15535269 263351588 22025352 10753176 1491401 53978678 7586556 167516425 zr2096_6_s1_R1_val_1_bismark_bt2_pe.bam 23909493 13016029 5434045 5459418 1 367348 12648681 205670965 19494840 7215123 1103250 43323436 5783632 128750684 zr2096_7_s1_R1_val_1_bismark_bt2_pe.bam 29273635 15123226 8438065 5712338 6 505812 14617414 260442115 23405343 9271729 1551207 54544532 7056497 164612807 zr2096_8_s1_R1_val_1_bismark_bt2_pe.bam 29483218 14200405 9943053 5339749 11 747564 13452841 228933398 18154221 9182606 1361580 47670865 7326787 145237339 zr2096_9_s1_R1_val_1_bismark_bt2_pe.bam 31847541 16108083 9175758 6563695 5 2024669 14083414 255572824 26756008 8438242 1647018 54139076 7002283 157590197