CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 201659 97650 67.37 299309 2 224866 92484 70.86 317350 3 208863 89986 69.89 298849 4 197777 85626 69.79 283403 5 199061 84177 70.28 283238 6 199688 81118 71.11 280806 7 209851 85796 70.98 295647 8 205077 81888 71.46 286965 9 205778 80237 71.95 286015 10 214543 81163 72.55 295706 11 218950 83371 72.42 302321 12 218084 81118 72.89 299202 13 219845 80027 73.31 299872 14 219035 80858 73.04 299893 15 218830 79604 73.33 298434 16 221361 79475 73.58 300836 17 220530 80440 73.27 300970 18 220816 78373 73.80 299189 19 222792 79220 73.77 302012 20 224686 79707 73.81 304393 21 225343 79015 74.04 304358 22 224750 79118 73.96 303868 23 225885 79553 73.95 305438 24 225538 78421 74.20 303959 25 228748 79023 74.32 307771 26 228424 80300 73.99 308724 27 226478 77999 74.38 304477 28 227682 78683 74.32 306365 29 227458 77996 74.47 305454 30 225304 77212 74.48 302516 31 228526 78168 74.51 306694 32 227902 77630 74.59 305532 33 226274 77030 74.60 303304 34 229334 77807 74.67 307141 35 226481 76677 74.71 303158 36 223492 75516 74.74 299008 37 224223 76210 74.63 300433 38 223669 75796 74.69 299465 39 222138 73807 75.06 295945 40 222716 75278 74.74 297994 41 218107 73841 74.71 291948 42 214909 72683 74.73 287592 43 214074 72328 74.75 286402 44 212490 72238 74.63 284728 45 208936 71154 74.60 280090 46 210433 71864 74.54 282297 47 206885 70445 74.60 277330 48 203650 69734 74.49 273384 49 201164 69895 74.21 271059 50 199075 69520 74.12 268595 51 193259 67930 73.99 261189 52 191667 67280 74.02 258947 53 190002 66243 74.15 256245 54 188498 66073 74.05 254571 55 186435 65337 74.05 251772 56 184329 64772 74.00 249101 57 182542 63975 74.05 246517 58 178899 63433 73.82 242332 59 174953 62577 73.66 237530 60 171403 61374 73.63 232777 61 168924 61211 73.40 230135 62 165551 59589 73.53 225140 63 161795 58527 73.44 220322 64 159597 58088 73.32 217685 65 156437 57037 73.28 213474 66 153365 56218 73.18 209583 67 151116 55232 73.23 206348 68 148159 54622 73.06 202781 69 144676 53355 73.06 198031 70 142948 53354 72.82 196302 71 140427 52386 72.83 192813 72 135860 51652 72.45 187512 73 132886 50843 72.33 183729 74 130236 50839 71.92 181075 75 125824 48622 72.13 174446 76 122500 48065 71.82 170565 77 117481 46859 71.49 164340 78 108116 43125 71.49 151241 79 86280 35870 70.63 122150 80 39387 16553 70.41 55940 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44870 458289 8.92 503159 2 27641 472816 5.52 500457 3 22661 474899 4.55 497560 4 16564 469971 3.40 486535 5 17908 453918 3.80 471826 6 19033 459163 3.98 478196 7 15025 465260 3.13 480285 8 15203 478931 3.08 494134 9 14559 466217 3.03 480776 10 13721 469104 2.84 482825 11 13660 469941 2.82 483601 12 13220 480483 2.68 493703 13 13424 472127 2.76 485551 14 12168 473233 2.51 485401 15 12315 485825 2.47 498140 16 11997 482212 2.43 494209 17 11984 480921 2.43 492905 18 11811 493734 2.34 505545 19 11539 489586 2.30 501125 20 11351 489826 2.26 501177 21 11613 496779 2.28 508392 22 11288 492206 2.24 503494 23 11082 497699 2.18 508781 24 11333 501272 2.21 512605 25 10819 498113 2.13 508932 26 11155 494492 2.21 505647 27 10910 506341 2.11 517251 28 10391 500366 2.03 510757 29 10801 503825 2.10 514626 30 10497 499546 2.06 510043 31 10414 502221 2.03 512635 32 10266 499146 2.02 509412 33 10458 502999 2.04 513457 34 10649 493003 2.11 503652 35 10085 493686 2.00 503771 36 9861 492796 1.96 502657 37 9856 484507 1.99 494363 38 9686 482845 1.97 492531 39 9369 490158 1.88 499527 40 9360 481832 1.91 491192 41 9330 477944 1.91 487274 42 9261 476536 1.91 485797 43 8902 470494 1.86 479396 44 8870 461229 1.89 470099 45 8842 465100 1.87 473942 46 8604 454091 1.86 462695 47 9129 452082 1.98 461211 48 8549 446856 1.88 455405 49 8678 439073 1.94 447751 50 8320 432885 1.89 441205 51 8874 431365 2.02 440239 52 8166 423082 1.89 431248 53 8107 416182 1.91 424289 54 7638 414815 1.81 422453 55 7792 409241 1.87 417033 56 7746 402038 1.89 409784 57 7773 401775 1.90 409548 58 7229 389911 1.82 397140 59 7837 384140 2.00 391977 60 7322 382181 1.88 389503 61 7091 371253 1.87 378344 62 7480 365072 2.01 372552 63 7122 362791 1.93 369913 64 6875 352604 1.91 359479 65 6835 346688 1.93 353523 66 6683 342453 1.91 349136 67 6523 335212 1.91 341735 68 6588 326902 1.98 333490 69 6283 323565 1.90 329848 70 6228 315285 1.94 321513 71 6512 309708 2.06 316220 72 6026 303952 1.94 309978 73 6212 298440 2.04 304652 74 6081 291233 2.05 297314 75 6495 287837 2.21 294332 76 6149 276440 2.18 282589 77 6066 266020 2.23 272086 78 5737 246299 2.28 252036 79 4821 197581 2.38 202402 80 2173 91169 2.33 93342 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138003 1441231 8.74 1579234 2 128863 1446553 8.18 1575416 3 112161 1462149 7.12 1574310 4 102497 1452662 6.59 1555159 5 103400 1414055 6.81 1517455 6 103293 1366918 7.03 1470211 7 92731 1362625 6.37 1455356 8 90280 1351028 6.26 1441308 9 94188 1369957 6.43 1464145 10 92481 1388541 6.24 1481022 11 91014 1366306 6.25 1457320 12 90022 1374330 6.15 1464352 13 93417 1396972 6.27 1490389 14 88031 1399699 5.92 1487730 15 89934 1420153 5.96 1510087 16 88691 1438030 5.81 1526721 17 87258 1432832 5.74 1520090 18 86634 1450991 5.63 1537625 19 88031 1463198 5.67 1551229 20 85968 1454751 5.58 1540719 21 86873 1460646 5.61 1547519 22 84995 1459554 5.50 1544549 23 81160 1459771 5.27 1540931 24 81718 1460440 5.30 1542158 25 81133 1473216 5.22 1554349 26 78623 1463703 5.10 1542326 27 79289 1470670 5.12 1549959 28 77409 1476442 4.98 1553851 29 76116 1463056 4.95 1539172 30 74967 1459733 4.88 1534700 31 74101 1486842 4.75 1560943 32 70442 1454993 4.62 1525435 33 71561 1448493 4.71 1520054 34 69566 1456149 4.56 1525715 35 66768 1447395 4.41 1514163 36 65418 1440386 4.34 1505804 37 64729 1441903 4.30 1506632 38 61977 1424794 4.17 1486771 39 61140 1420683 4.13 1481823 40 59549 1422298 4.02 1481847 41 57790 1407656 3.94 1465446 42 56078 1390406 3.88 1446484 43 54463 1384718 3.78 1439181 44 52252 1359967 3.70 1412219 45 51226 1343322 3.67 1394548 46 49785 1343492 3.57 1393277 47 48521 1321482 3.54 1370003 48 46632 1317626 3.42 1364258 49 45797 1310660 3.38 1356457 50 43709 1268834 3.33 1312543 51 43792 1247587 3.39 1291379 52 41273 1258623 3.18 1299896 53 40383 1216508 3.21 1256891 54 38296 1200314 3.09 1238610 55 37228 1190789 3.03 1228017 56 35508 1170588 2.94 1206096 57 34935 1160696 2.92 1195631 58 33614 1140764 2.86 1174378 59 34384 1124570 2.97 1158954 60 31623 1105446 2.78 1137069 61 31152 1086511 2.79 1117663 62 30133 1063182 2.76 1093315 63 29383 1052063 2.72 1081446 64 28530 1047754 2.65 1076284 65 27682 1016514 2.65 1044196 66 27174 994608 2.66 1021782 67 26473 986342 2.61 1012815 68 25747 975866 2.57 1001613 69 25267 954850 2.58 980117 70 24654 930952 2.58 955606 71 25162 911991 2.68 937153 72 23526 900649 2.55 924175 73 23298 876038 2.59 899336 74 23176 855802 2.64 878978 75 24156 834642 2.81 858798 76 23287 817588 2.77 840875 77 22204 778854 2.77 801058 78 21310 723460 2.86 744770 79 16829 587248 2.79 604077 80 7145 262407 2.65 269552 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 132145 71384 64.93 203529 2 126305 56338 69.15 182643 3 112971 51677 68.61 164648 4 93579 46804 66.66 140383 5 91020 44616 67.11 135636 6 90258 41933 68.28 132191 7 94853 44825 67.91 139678 8 89345 39942 69.11 129287 9 88171 38359 69.68 126530 10 88893 38451 69.81 127344 11 88984 38594 69.75 127578 12 85453 36700 69.96 122153 13 84256 35339 70.45 119595 14 82787 35051 70.25 117838 15 82178 33671 70.94 115849 16 80410 32329 71.32 112739 17 78740 31882 71.18 110622 18 75221 30303 71.28 105524 19 73611 29628 71.30 103239 20 72133 28842 71.44 100975 21 70522 27841 71.70 98363 22 68444 26972 71.73 95416 23 67163 26343 71.83 93506 24 66025 25384 72.23 91409 25 65252 25418 71.97 90670 26 63799 24596 72.17 88395 27 61312 23487 72.30 84799 28 61450 23058 72.72 84508 29 59121 22171 72.73 81292 30 57484 21205 73.05 78689 31 57866 20858 73.50 78724 32 56117 20525 73.22 76642 33 54880 20001 73.29 74881 34 54952 19920 73.39 74872 35 52954 18888 73.71 71842 36 50435 17924 73.78 68359 37 50161 17631 73.99 67792 38 49346 17225 74.13 66571 39 48294 16629 74.39 64923 40 47900 16300 74.61 64200 41 45766 16027 74.06 61793 42 43358 15377 73.82 58735 43 42884 14740 74.42 57624 44 41925 14658 74.09 56583 45 40970 14221 74.23 55191 46 40395 13493 74.96 53888 47 39682 13557 74.54 53239 48 37913 12963 74.52 50876 49 36778 12597 74.49 49375 50 35769 12208 74.55 47977 51 34638 11759 74.66 46397 52 33567 11417 74.62 44984 53 32695 11265 74.37 43960 54 31947 10963 74.45 42910 55 31428 10797 74.43 42225 56 30372 10665 74.01 41037 57 30389 10478 74.36 40867 58 28932 9972 74.37 38904 59 27594 9662 74.07 37256 60 27108 9318 74.42 36426 61 26143 9330 73.70 35473 62 25544 9183 73.56 34727 63 24837 8530 74.44 33367 64 24158 8523 73.92 32681 65 23424 8260 73.93 31684 66 22692 8052 73.81 30744 67 22116 7566 74.51 29682 68 21448 7559 73.94 29007 69 20888 7257 74.22 28145 70 20142 7235 73.57 27377 71 19793 7131 73.51 26924 72 19044 7133 72.75 26177 73 18445 6827 72.99 25272 74 17950 6629 73.03 24579 75 17160 6321 73.08 23481 76 16138 6157 72.38 22295 77 15497 5869 72.53 21366 78 14310 5616 71.82 19926 79 12225 4968 71.10 17193 80 8254 3496 70.25 11750 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35941 323013 10.01 358954 2 15238 270891 5.33 286129 3 15547 255548 5.73 271095 4 8503 243756 3.37 252259 5 9914 219413 4.32 229327 6 12321 214520 5.43 226841 7 7362 215031 3.31 222393 8 8107 224014 3.49 232121 9 6747 201736 3.24 208483 10 6701 199804 3.24 206505 11 6425 197577 3.15 204002 12 5765 199575 2.81 205340 13 5433 192747 2.74 198180 14 5207 186565 2.72 191772 15 4949 187302 2.57 192251 16 4752 181103 2.56 185855 17 4598 175115 2.56 179713 18 4413 172905 2.49 177318 19 4124 165741 2.43 169865 20 3978 161568 2.40 165546 21 3836 160858 2.33 164694 22 3657 154012 2.32 157669 23 3506 153993 2.23 157499 24 3361 151379 2.17 154740 25 3316 145683 2.23 148999 26 3071 141169 2.13 144240 27 3155 141409 2.18 144564 28 2810 137569 2.00 140379 29 2825 136438 2.03 139263 30 2657 131271 1.98 133928 31 2685 129733 2.03 132418 32 2355 126073 1.83 128428 33 2544 124857 2.00 127401 34 2304 119373 1.89 121677 35 2177 117240 1.82 119417 36 2048 114655 1.75 116703 37 2004 109971 1.79 111975 38 2016 108546 1.82 110562 39 1826 108027 1.66 109853 40 1755 103895 1.66 105650 41 1726 101456 1.67 103182 42 1707 100253 1.67 101960 43 1632 96242 1.67 97874 44 1586 92658 1.68 94244 45 1468 92221 1.57 93689 46 1478 88735 1.64 90213 47 1416 87125 1.60 88541 48 1370 84541 1.59 85911 49 1415 81331 1.71 82746 50 1342 78640 1.68 79982 51 1282 77780 1.62 79062 52 1198 75067 1.57 76265 53 1225 72873 1.65 74098 54 1138 71469 1.57 72607 55 1102 69799 1.55 70901 56 1102 67444 1.61 68546 57 1147 67392 1.67 68539 58 1107 64395 1.69 65502 59 1071 62391 1.69 63462 60 993 61642 1.59 62635 61 1010 58414 1.70 59424 62 931 57224 1.60 58155 63 919 55912 1.62 56831 64 916 53862 1.67 54778 65 977 52240 1.84 53217 66 905 51128 1.74 52033 67 824 50100 1.62 50924 68 854 48060 1.75 48914 69 828 46831 1.74 47659 70 742 45773 1.60 46515 71 760 44522 1.68 45282 72 726 42942 1.66 43668 73 719 41740 1.69 42459 74 675 40160 1.65 40835 75 702 39585 1.74 40287 76 659 37771 1.71 38430 77 631 35899 1.73 36530 78 616 33608 1.80 34224 79 565 29011 1.91 29576 80 357 19313 1.81 19670 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87124 1042814 7.71 1129938 2 65065 829864 7.27 894929 3 44575 781915 5.39 826490 4 35217 735582 4.57 770799 5 36675 699139 4.98 735814 6 42273 642372 6.17 684645 7 28374 631660 4.30 660034 8 28671 612230 4.47 640901 9 29046 615847 4.50 644893 10 27218 608294 4.28 635512 11 25659 581198 4.23 606857 12 23057 573846 3.86 596903 13 22412 571490 3.77 593902 14 21108 561144 3.63 582252 15 20715 558661 3.58 579376 16 19247 551831 3.37 571078 17 18319 535809 3.31 554128 18 17051 526127 3.14 543178 19 16833 510722 3.19 527555 20 15916 496145 3.11 512061 21 15192 488172 3.02 503364 22 14683 472700 3.01 487383 23 13965 465286 2.91 479251 24 13299 454666 2.84 467965 25 12899 447720 2.80 460619 26 12180 436406 2.72 448586 27 12488 427832 2.84 440320 28 11593 420117 2.69 431710 29 11211 408126 2.67 419337 30 10523 400428 2.56 410951 31 10674 402071 2.59 412745 32 9502 383132 2.42 392634 33 9758 374041 2.54 383799 34 8974 369113 2.37 378087 35 8711 361088 2.36 369799 36 8163 353961 2.25 362124 37 8016 346542 2.26 354558 38 7571 336119 2.20 343690 39 7398 329615 2.20 337013 40 7190 324598 2.17 331788 41 6963 317138 2.15 324101 42 6652 305812 2.13 312464 43 6410 300233 2.09 306643 44 6081 289834 2.05 295915 45 6100 282628 2.11 288728 46 5848 278516 2.06 284364 47 5751 270417 2.08 276168 48 5543 268045 2.03 273588 49 5402 262545 2.02 267947 50 5155 248254 2.03 253409 51 4984 241367 2.02 246351 52 4881 241422 1.98 246303 53 4880 228088 2.09 232968 54 4719 221930 2.08 226649 55 4567 217318 2.06 221885 56 4465 211937 2.06 216402 57 4584 208435 2.15 213019 58 4214 199047 2.07 203261 59 4096 198303 2.02 202399 60 4138 190196 2.13 194334 61 4322 183504 2.30 187826 62 3826 179326 2.09 183152 63 3800 176590 2.11 180390 64 3598 174799 2.02 178397 65 3590 165791 2.12 169381 66 3466 160093 2.12 163559 67 3386 158636 2.09 162022 68 3325 158909 2.05 162234 69 3256 153572 2.08 156828 70 3185 146496 2.13 149681 71 3123 142254 2.15 145377 72 2985 140658 2.08 143643 73 2949 133255 2.17 136204 74 2900 128727 2.20 131627 75 2723 124805 2.14 127528 76 2691 121418 2.17 124109 77 2553 115926 2.15 118479 78 2469 109028 2.21 111497 79 2120 96788 2.14 98908 80 1379 64704 2.09 66083