zr2096_3_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14807502 lines in total Total number of methylation call strings processed: 29615004 Final Cytosine Methylation Report ================================= Total number of C's analysed: 267693368 Total methylated C's in CpG context: 29337022 Total methylated C's in CHG context: 1506507 Total methylated C's in CHH context: 6531799 Total C to T conversions in CpG context: 8890935 Total C to T conversions in CHG context: 57632709 Total C to T conversions in CHH context: 163794396 C methylated in CpG context: 76.7% C methylated in CHG context: 2.5% C methylated in CHH context: 3.8%