CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 225196 118086 65.60 343282 2 250349 109841 69.50 360190 3 233082 108571 68.22 341653 4 220880 102874 68.22 323754 5 223364 101604 68.73 324968 6 222706 99246 69.17 321952 7 229049 105444 68.48 334493 8 227787 99173 69.67 326960 9 229272 95720 70.55 324992 10 237351 99010 70.56 336361 11 242348 100409 70.71 342757 12 240431 97702 71.11 338133 13 244116 96945 71.58 341061 14 243465 98648 71.17 342113 15 244360 96102 71.77 340462 16 246936 95968 72.01 342904 17 245381 97245 71.62 342626 18 245571 95085 72.09 340656 19 247686 95494 72.17 343180 20 247913 96160 72.05 344073 21 248589 94982 72.35 343571 22 249741 95915 72.25 345656 23 249885 96460 72.15 346345 24 250175 95126 72.45 345301 25 252530 97335 72.18 349865 26 251354 97368 72.08 348722 27 248409 94729 72.39 343138 28 251792 94803 72.65 346595 29 250694 95954 72.32 346648 30 248066 93217 72.69 341283 31 251670 94662 72.67 346332 32 249357 94401 72.54 343758 33 248007 92823 72.77 340830 34 249906 94236 72.62 344142 35 247351 93132 72.65 340483 36 244097 91529 72.73 335626 37 244627 91482 72.78 336109 38 243395 91464 72.69 334859 39 240626 90599 72.65 331225 40 241268 90500 72.72 331768 41 236196 89444 72.53 325640 42 231327 87597 72.53 318924 43 230633 86852 72.64 317485 44 230227 87622 72.43 317849 45 225253 85112 72.58 310365 46 224375 85546 72.40 309921 47 220982 85286 72.15 306268 48 216205 83884 72.05 300089 49 214156 82634 72.16 296790 50 211145 82901 71.81 294046 51 204528 79875 71.91 284403 52 204337 79590 71.97 283927 53 200897 78949 71.79 279846 54 198858 77572 71.94 276430 55 196679 76662 71.95 273341 56 192213 76531 71.52 268744 57 189792 75664 71.50 265456 58 186701 73776 71.68 260477 59 181266 72836 71.34 254102 60 177643 71528 71.29 249171 61 175341 70210 71.41 245551 62 170218 68939 71.17 239157 63 167099 68001 71.08 235100 64 164407 66336 71.25 230743 65 160054 65688 70.90 225742 66 156084 64048 70.90 220132 67 153888 62959 70.97 216847 68 150037 62225 70.68 212262 69 146492 60869 70.65 207361 70 144393 60200 70.58 204593 71 140836 59408 70.33 200244 72 136125 57410 70.34 193535 73 133194 56958 70.05 190152 74 129537 56293 69.71 185830 75 124979 54453 69.65 179432 76 121821 53165 69.62 174986 77 115759 51601 69.17 167360 78 105648 48146 68.69 153794 79 83837 38679 68.43 122516 80 38708 18132 68.10 56840 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 52995 523369 9.19 576364 2 33003 539443 5.77 572446 3 27251 544771 4.76 572022 4 20150 536959 3.62 557109 5 21480 518896 3.98 540376 6 22520 524804 4.11 547324 7 17653 530422 3.22 548075 8 18007 541477 3.22 559484 9 16700 531937 3.04 548637 10 16592 530530 3.03 547122 11 16481 532877 3.00 549358 12 15764 544343 2.81 560107 13 16010 535651 2.90 551661 14 15523 538717 2.80 554240 15 14963 555263 2.62 570226 16 15047 547626 2.67 562673 17 14754 545603 2.63 560357 18 14916 560416 2.59 575332 19 14116 553449 2.49 567565 20 14196 553209 2.50 567405 21 14304 564424 2.47 578728 22 14263 556741 2.50 571004 23 13909 563635 2.41 577544 24 14273 568632 2.45 582905 25 13991 563376 2.42 577367 26 13934 558105 2.44 572039 27 13492 573701 2.30 587193 28 13260 564023 2.30 577283 29 13608 566580 2.35 580188 30 12948 563565 2.25 576513 31 13118 564858 2.27 577976 32 13158 561097 2.29 574255 33 13621 565395 2.35 579016 34 13414 552205 2.37 565619 35 12869 550274 2.29 563143 36 12731 551315 2.26 564046 37 12542 541627 2.26 554169 38 12643 537700 2.30 550343 39 12011 544391 2.16 556402 40 11611 534055 2.13 545666 41 12076 529279 2.23 541355 42 11472 527903 2.13 539375 43 11363 518585 2.14 529948 44 11488 508406 2.21 519894 45 11429 512513 2.18 523942 46 10986 499824 2.15 510810 47 11237 494886 2.22 506123 48 10886 490616 2.17 501502 49 10913 482878 2.21 493791 50 10445 471851 2.17 482296 51 10714 471830 2.22 482544 52 9915 460187 2.11 470102 53 9882 453876 2.13 463758 54 9939 449348 2.16 459287 55 9469 441082 2.10 450551 56 9400 435390 2.11 444790 57 9010 433402 2.04 442412 58 8628 419102 2.02 427730 59 9277 410273 2.21 419550 60 8414 409932 2.01 418346 61 8366 395739 2.07 404105 62 8539 387636 2.16 396175 63 7988 383960 2.04 391948 64 7768 372158 2.04 379926 65 7625 365748 2.04 373373 66 7557 359523 2.06 367080 67 7211 350199 2.02 357410 68 7282 343375 2.08 350657 69 7258 336518 2.11 343776 70 6942 327600 2.08 334542 71 7270 321030 2.21 328300 72 6717 315196 2.09 321913 73 6663 306719 2.13 313382 74 6630 299518 2.17 306148 75 6999 295808 2.31 302807 76 6789 282403 2.35 289192 77 6402 270848 2.31 277250 78 6221 250536 2.42 256757 79 5015 199490 2.45 204505 80 2295 91801 2.44 94096 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180732 1593893 10.18 1774625 2 170242 1592945 9.66 1763187 3 158880 1610055 8.98 1768935 4 148182 1599456 8.48 1747638 5 145302 1564358 8.50 1709660 6 147028 1506847 8.89 1653875 7 135835 1507346 8.27 1643181 8 128665 1494072 7.93 1622737 9 138823 1511949 8.41 1650772 10 136745 1531930 8.19 1668675 11 133326 1511817 8.10 1645143 12 135580 1517342 8.20 1652922 13 140107 1541735 8.33 1681842 14 131715 1548213 7.84 1679928 15 137437 1568993 8.05 1706430 16 137523 1585726 7.98 1723249 17 133539 1581002 7.79 1714541 18 135518 1599362 7.81 1734880 19 136488 1612935 7.80 1749423 20 130363 1605063 7.51 1735426 21 135018 1611043 7.73 1746061 22 133620 1610743 7.66 1744363 23 126366 1610537 7.28 1736903 24 129157 1606150 7.44 1735307 25 127545 1619961 7.30 1747506 26 121465 1609734 7.02 1731199 27 124992 1610214 7.20 1735206 28 121969 1620881 7.00 1742850 29 119423 1599829 6.95 1719252 30 118373 1596141 6.90 1714514 31 118220 1623182 6.79 1741402 32 111571 1590794 6.55 1702365 33 112537 1575603 6.67 1688140 34 110522 1579801 6.54 1690323 35 104483 1569046 6.24 1673529 36 104315 1560981 6.26 1665296 37 104045 1558775 6.26 1662820 38 97898 1537203 5.99 1635101 39 97400 1531670 5.98 1629070 40 95320 1531808 5.86 1627128 41 90547 1509602 5.66 1600149 42 88599 1487571 5.62 1576170 43 86062 1478799 5.50 1564861 44 80967 1448716 5.29 1529683 45 79180 1427453 5.26 1506633 46 77090 1427704 5.12 1504794 47 73183 1398788 4.97 1471971 48 70755 1390085 4.84 1460840 49 69370 1377051 4.80 1446421 50 64289 1335861 4.59 1400150 51 65012 1308240 4.73 1373252 52 60762 1311784 4.43 1372546 53 57212 1266487 4.32 1323699 54 55341 1245695 4.25 1301036 55 53586 1233668 4.16 1287254 56 49799 1209585 3.95 1259384 57 48697 1196166 3.91 1244863 58 46571 1169067 3.83 1215638 59 45461 1150636 3.80 1196097 60 42357 1129805 3.61 1172162 61 41101 1103273 3.59 1144374 62 39139 1078428 3.50 1117567 63 37692 1063668 3.42 1101360 64 36134 1054731 3.31 1090865 65 34805 1020018 3.30 1054823 66 33281 999940 3.22 1033221 67 32414 988673 3.17 1021087 68 31025 969837 3.10 1000862 69 30442 950138 3.10 980580 70 29099 924524 3.05 953623 71 29025 902055 3.12 931080 72 27845 887350 3.04 915195 73 27592 861435 3.10 889027 74 26550 838830 3.07 865380 75 27259 815586 3.23 842845 76 26838 795688 3.26 822526 77 25105 758256 3.20 783361 78 23588 699781 3.26 723369 79 18660 565555 3.19 584215 80 7783 253705 2.98 261488 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 139114 79824 63.54 218938 2 131757 60694 68.46 192451 3 116936 55928 67.65 172864 4 91502 50626 64.38 142128 5 89785 47954 65.18 137739 6 87934 44842 66.23 132776 7 88059 49149 64.18 137208 8 86453 42318 67.14 128771 9 85806 40886 67.73 126692 10 86734 41298 67.74 128032 11 85186 41248 67.38 126434 12 82029 39223 67.65 121252 13 81088 37634 68.30 118722 14 79939 37346 68.16 117285 15 78214 35861 68.56 114075 16 76904 34257 69.18 111161 17 74165 33913 68.62 108078 18 71159 31731 69.16 102890 19 68714 30617 69.18 99331 20 66558 29574 69.24 96132 21 64987 28803 69.29 93790 22 63927 27940 69.59 91867 23 62142 27355 69.43 89497 24 61001 26171 69.98 87172 25 60386 26052 69.86 86438 26 58394 25252 69.81 83646 27 56759 23843 70.42 80602 28 55640 23881 69.97 79521 29 53809 23139 69.93 76948 30 52156 21474 70.84 73630 31 52347 21734 70.66 74081 32 50868 21024 70.76 71892 33 49647 20426 70.85 70073 34 49230 20022 71.09 69252 35 47277 19118 71.21 66395 36 45391 18329 71.24 63720 37 44139 18020 71.01 62159 38 43736 17346 71.60 61082 39 42562 17090 71.35 59652 40 41673 16842 71.22 58515 41 39989 16109 71.28 56098 42 38629 15133 71.85 53762 43 37475 14863 71.60 52338 44 37005 14663 71.62 51668 45 35695 14026 71.79 49721 46 34716 13946 71.34 48662 47 33639 13841 70.85 47480 48 32551 13144 71.24 45695 49 31632 12505 71.67 44137 50 30848 12322 71.46 43170 51 29594 11830 71.44 41424 52 28695 11466 71.45 40161 53 27830 11225 71.26 39055 54 27382 10920 71.49 38302 55 26674 10817 71.15 37491 56 25865 10670 70.80 36535 57 25431 10453 70.87 35884 58 24238 9760 71.29 33998 59 23304 9673 70.67 32977 60 22446 9320 70.66 31766 61 21931 8895 71.14 30826 62 21466 8745 71.05 30211 63 20550 8338 71.14 28888 64 19881 8171 70.87 28052 65 19214 8091 70.37 27305 66 18707 7754 70.70 26461 67 17867 7579 70.22 25446 68 17539 7467 70.14 25006 69 16809 7281 69.78 24090 70 16557 7093 70.01 23650 71 15900 7083 69.18 22983 72 15443 6679 69.81 22122 73 14735 6710 68.71 21445 74 14385 6457 69.02 20842 75 14006 6084 69.72 20090 76 13171 6115 68.29 19286 77 12368 5785 68.13 18153 78 11306 5466 67.41 16772 79 9650 4757 66.98 14407 80 6363 3316 65.74 9679 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43492 344664 11.20 388156 2 17457 280140 5.87 297597 3 18564 264123 6.57 282687 4 9058 254308 3.44 263366 5 10514 222970 4.50 233484 6 14421 216410 6.25 230831 7 7508 219059 3.31 226567 8 8779 227068 3.72 235847 9 6959 203886 3.30 210845 10 6911 200191 3.34 207102 11 6420 200060 3.11 206480 12 5714 201062 2.76 206776 13 5479 193821 2.75 199300 14 5242 186431 2.73 191673 15 5154 187377 2.68 192531 16 4956 181373 2.66 186329 17 4654 173547 2.61 178201 18 4437 169884 2.55 174321 19 4128 160938 2.50 165066 20 3953 157017 2.46 160970 21 3793 155052 2.39 158845 22 3736 148195 2.46 151931 23 3663 148017 2.41 151680 24 3353 146098 2.24 149451 25 3151 139199 2.21 142350 26 3067 135711 2.21 138778 27 3060 135184 2.21 138244 28 2820 130043 2.12 132863 29 2646 128987 2.01 131633 30 2544 123414 2.02 125958 31 2665 121732 2.14 124397 32 2412 118643 1.99 121055 33 2435 117325 2.03 119760 34 2112 111594 1.86 113706 35 2056 109693 1.84 111749 36 2002 107437 1.83 109439 37 1861 102415 1.78 104276 38 1895 100349 1.85 102244 39 1771 99097 1.76 100868 40 1714 95066 1.77 96780 41 1671 93877 1.75 95548 42 1613 90996 1.74 92609 43 1539 87642 1.73 89181 44 1469 85304 1.69 86773 45 1410 83519 1.66 84929 46 1402 80222 1.72 81624 47 1347 79091 1.67 80438 48 1335 76199 1.72 77534 49 1308 73553 1.75 74861 50 1296 71236 1.79 72532 51 1231 70718 1.71 71949 52 1155 67352 1.69 68507 53 1183 64900 1.79 66083 54 1127 63218 1.75 64345 55 1070 61872 1.70 62942 56 1085 59922 1.78 61007 57 1126 59166 1.87 60292 58 979 56473 1.70 57452 59 985 54750 1.77 55735 60 962 54123 1.75 55085 61 959 51103 1.84 52062 62 843 49875 1.66 50718 63 835 48973 1.68 49808 64 826 46982 1.73 47808 65 842 45492 1.82 46334 66 764 44789 1.68 45553 67 789 42926 1.80 43715 68 750 41353 1.78 42103 69 734 40653 1.77 41387 70 681 39276 1.70 39957 71 784 37934 2.02 38718 72 625 36958 1.66 37583 73 642 35419 1.78 36061 74 658 34455 1.87 35113 75 626 33943 1.81 34569 76 590 32285 1.79 32875 77 564 30650 1.81 31214 78 538 28381 1.86 28919 79 458 24373 1.84 24831 80 309 15907 1.91 16216 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 108343 1081165 9.11 1189508 2 76601 828549 8.46 905150 3 50725 765044 6.22 815769 4 38266 716063 5.07 754329 5 40221 682027 5.57 722248 6 48826 621414 7.28 670240 7 30707 615374 4.75 646081 8 30878 593092 4.95 623970 9 32103 591530 5.15 623633 10 30571 585052 4.97 615623 11 27585 560100 4.69 587685 12 25530 552316 4.42 577846 13 24833 552077 4.30 576910 14 22799 541628 4.04 564427 15 23105 537443 4.12 560548 16 21667 529989 3.93 551656 17 20073 511595 3.78 531668 18 18669 497050 3.62 515719 19 18078 479630 3.63 497708 20 16206 464004 3.37 480210 21 16691 454552 3.54 471243 22 15956 438279 3.51 454235 23 14821 430136 3.33 444957 24 14428 417768 3.34 432196 25 14370 411400 3.38 425770 26 12734 400866 3.08 413600 27 13375 390438 3.31 403813 28 12150 383253 3.07 395403 29 11558 371580 3.02 383138 30 11108 362602 2.97 373710 31 11301 362436 3.02 373737 32 9947 345377 2.80 355324 33 10440 337693 3.00 348133 34 9638 333035 2.81 342673 35 9371 323719 2.81 333090 36 9130 316917 2.80 326047 37 8988 309889 2.82 318877 38 8096 299491 2.63 307587 39 8114 293567 2.69 301681 40 7791 287667 2.64 295458 41 7551 280063 2.63 287614 42 7091 269830 2.56 276921 43 7139 264167 2.63 271306 44 6609 253662 2.54 260271 45 6633 246982 2.62 253615 46 6337 242804 2.54 249141 47 6206 234832 2.57 241038 48 6043 232421 2.53 238464 49 5901 227132 2.53 233033 50 5503 214708 2.50 220211 51 5562 208009 2.60 213571 52 5617 206742 2.65 212359 53 5173 194577 2.59 199750 54 5206 188692 2.68 193898 55 5025 185235 2.64 190260 56 4655 179612 2.53 184267 57 5075 176450 2.80 181525 58 4613 168728 2.66 173341 59 4354 167374 2.54 171728 60 4271 160197 2.60 164468 61 4544 153582 2.87 158126 62 4033 150411 2.61 154444 63 4106 146466 2.73 150572 64 4108 145003 2.75 149111 65 3776 137764 2.67 141540 66 3617 132254 2.66 135871 67 3678 130437 2.74 134115 68 3451 129685 2.59 133136 69 3511 125341 2.72 128852 70 3389 120025 2.75 123414 71 3285 116142 2.75 119427 72 3202 113921 2.73 117123 73 3189 108531 2.85 111720 74 2909 104473 2.71 107382 75 2874 101064 2.77 103938 76 2891 97549 2.88 100440 77 2709 93051 2.83 95760 78 2410 86905 2.70 89315 79 2096 76228 2.68 78324 80 1291 50443 2.50 51734