CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12758 7437 63.17 20195 2 14440 6701 68.30 21141 3 13647 6703 67.06 20350 4 12456 6418 66.00 18874 5 12341 6284 66.26 18625 6 12458 6041 67.34 18499 7 12828 6311 67.03 19139 8 12912 6115 67.86 19027 9 12845 5833 68.77 18678 10 13369 5984 69.08 19353 11 13666 6206 68.77 19872 12 13443 6050 68.96 19493 13 13501 5927 69.49 19428 14 13385 5823 69.68 19208 15 13740 5922 69.88 19662 16 13922 5939 70.10 19861 17 13817 5905 70.06 19722 18 13554 5834 69.91 19388 19 13995 5968 70.10 19963 20 13891 5843 70.39 19734 21 13979 6021 69.89 20000 22 13938 5936 70.13 19874 23 13760 5947 69.82 19707 24 14097 5683 71.27 19780 25 13975 5848 70.50 19823 26 14192 5876 70.72 20068 27 13904 5812 70.52 19716 28 14284 5832 71.01 20116 29 13964 5760 70.80 19724 30 14048 5749 70.96 19797 31 14180 5698 71.34 19878 32 14419 5872 71.06 20291 33 14118 5602 71.59 19720 34 14419 5562 72.16 19981 35 14036 5791 70.79 19827 36 14332 5615 71.85 19947 37 13913 5568 71.42 19481 38 14081 5755 70.99 19836 39 14046 5558 71.65 19604 40 14303 5640 71.72 19943 41 13932 5573 71.43 19505 42 13574 5438 71.40 19012 43 13482 5360 71.55 18842 44 13526 5437 71.33 18963 45 13406 5318 71.60 18724 46 13409 5338 71.53 18747 47 13346 5314 71.52 18660 48 13221 5331 71.26 18552 49 13050 5324 71.02 18374 50 12896 5314 70.82 18210 51 12449 5141 70.77 17590 52 12554 5051 71.31 17605 53 12455 5011 71.31 17466 54 12374 4878 71.73 17252 55 12335 5026 71.05 17361 56 12194 5007 70.89 17201 57 12049 5034 70.53 17083 58 11615 4947 70.13 16562 59 11474 4854 70.27 16328 60 11427 4777 70.52 16204 61 11254 4542 71.25 15796 62 11028 4579 70.66 15607 63 10845 4505 70.65 15350 64 10711 4474 70.54 15185 65 10772 4359 71.19 15131 66 10233 4371 70.07 14604 67 10396 4317 70.66 14713 68 9970 4281 69.96 14251 69 10073 4262 70.27 14335 70 9834 4288 69.64 14122 71 9775 4161 70.14 13936 72 9579 4143 69.81 13722 73 9412 3941 70.49 13353 74 9238 4066 69.44 13304 75 8819 3964 68.99 12783 76 8652 3875 69.07 12527 77 8298 3836 68.39 12134 78 7725 3631 68.03 11356 79 6254 2952 67.93 9206 80 3015 1380 68.60 4395 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4113 29642 12.18 33755 2 2595 30834 7.76 33429 3 2111 30423 6.49 32534 4 1548 30165 4.88 31713 5 1572 28562 5.22 30134 6 1673 29070 5.44 30743 7 1422 29737 4.56 31159 8 1295 29960 4.14 31255 9 1279 28995 4.22 30274 10 1324 29361 4.31 30685 11 1212 29716 3.92 30928 12 1160 30252 3.69 31412 13 1188 29757 3.84 30945 14 1132 30281 3.60 31413 15 1216 30851 3.79 32067 16 1146 30081 3.67 31227 17 1122 30194 3.58 31316 18 1118 31092 3.47 32210 19 1090 30537 3.45 31627 20 1086 30472 3.44 31558 21 1113 31428 3.42 32541 22 1052 30680 3.32 31732 23 1020 30818 3.20 31838 24 1083 31137 3.36 32220 25 997 31118 3.10 32115 26 976 30961 3.06 31937 27 980 31549 3.01 32529 28 1008 31588 3.09 32596 29 1063 31850 3.23 32913 30 995 31218 3.09 32213 31 945 31702 2.89 32647 32 1012 31582 3.10 32594 33 1107 31729 3.37 32836 34 1091 31123 3.39 32214 35 1013 31190 3.15 32203 36 980 31387 3.03 32367 37 936 30805 2.95 31741 38 856 30473 2.73 31329 39 963 31063 3.01 32026 40 899 31156 2.80 32055 41 887 30866 2.79 31753 42 867 30658 2.75 31525 43 886 29973 2.87 30859 44 854 30019 2.77 30873 45 871 30500 2.78 31371 46 814 29511 2.68 30325 47 807 29349 2.68 30156 48 804 29232 2.68 30036 49 790 28789 2.67 29579 50 787 28196 2.72 28983 51 751 28455 2.57 29206 52 685 27889 2.40 28574 53 715 27902 2.50 28617 54 657 27405 2.34 28062 55 652 27541 2.31 28193 56 688 26972 2.49 27660 57 702 27091 2.53 27793 58 639 26445 2.36 27084 59 573 26452 2.12 27025 60 589 25977 2.22 26566 61 588 24894 2.31 25482 62 573 24866 2.25 25439 63 563 24985 2.20 25548 64 554 24396 2.22 24950 65 541 24029 2.20 24570 66 463 23653 1.92 24116 67 432 23406 1.81 23838 68 499 23140 2.11 23639 69 450 22513 1.96 22963 70 491 22270 2.16 22761 71 512 21952 2.28 22464 72 410 21758 1.85 22168 73 435 21300 2.00 21735 74 455 21112 2.11 21567 75 471 20782 2.22 21253 76 478 19959 2.34 20437 77 444 19432 2.23 19876 78 395 18276 2.12 18671 79 342 14863 2.25 15205 80 168 6875 2.39 7043 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16227 99479 14.02 115706 2 14933 100745 12.91 115678 3 14785 101977 12.66 116762 4 13580 101159 11.84 114739 5 13014 98935 11.62 111949 6 13300 94892 12.29 108192 7 12743 94742 11.86 107485 8 12135 94951 11.33 107086 9 12690 95594 11.72 108284 10 12898 96216 11.82 109114 11 12577 95295 11.66 107872 12 12799 96059 11.76 108858 13 12737 97816 11.52 110553 14 12320 98697 11.10 111017 15 12933 100085 11.44 113018 16 12908 100998 11.33 113906 17 12288 100756 10.87 113044 18 12731 102282 11.07 115013 19 12646 102943 10.94 115589 20 12246 103017 10.62 115263 21 12908 103028 11.13 115936 22 12681 102113 11.05 114794 23 11960 102527 10.45 114487 24 12163 102086 10.65 114249 25 12019 103023 10.45 115042 26 11690 102938 10.20 114628 27 11785 103122 10.26 114907 28 11778 102808 10.28 114586 29 11339 102327 9.98 113666 30 11222 102643 9.86 113865 31 11123 104807 9.59 115930 32 10294 102348 9.14 112642 33 10667 100939 9.56 111606 34 10620 101890 9.44 112510 35 10032 102002 8.95 112034 36 9891 101472 8.88 111363 37 9917 100847 8.95 110764 38 9404 100717 8.54 110121 39 9407 100737 8.54 110144 40 9191 100577 8.37 109768 41 8834 100051 8.11 108885 42 8561 98535 7.99 107096 43 8346 98084 7.84 106430 44 7801 95582 7.55 103383 45 7567 95193 7.36 102760 46 7567 95083 7.37 102650 47 7023 93923 6.96 100946 48 6843 93433 6.82 100276 49 6734 92899 6.76 99633 50 6221 90079 6.46 96300 51 6160 88985 6.47 95145 52 5779 89300 6.08 95079 53 5469 87022 5.91 92491 54 5154 86255 5.64 91409 55 5213 85400 5.75 90613 56 4704 83768 5.32 88472 57 4550 83175 5.19 87725 58 4374 81503 5.09 85877 59 4191 81243 4.91 85434 60 3868 79596 4.63 83464 61 3735 77449 4.60 81184 62 3508 76706 4.37 80214 63 3208 76025 4.05 79233 64 3101 75886 3.93 78987 65 3119 73794 4.06 76913 66 2946 72496 3.90 75442 67 2868 72075 3.83 74943 68 2650 72348 3.53 74998 69 2546 70584 3.48 73130 70 2497 69062 3.49 71559 71 2489 67342 3.56 69831 72 2181 67066 3.15 69247 73 2391 65069 3.54 67460 74 2087 64004 3.16 66091 75 2272 62480 3.51 64752 76 2092 61180 3.31 63272 77 2035 59393 3.31 61428 78 1867 55336 3.26 57203 79 1544 45225 3.30 46769 80 646 20612 3.04 21258 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8764 5442 61.69 14206 2 9475 4381 68.38 13856 3 8408 4217 66.60 12625 4 6764 3934 63.23 10698 5 6636 3654 64.49 10290 6 6658 3500 65.54 10158 7 6880 3638 65.41 10518 8 6661 3371 66.40 10032 9 6626 3199 67.44 9825 10 6684 3340 66.68 10024 11 6596 3382 66.11 9978 12 6429 3154 67.09 9583 13 6459 3008 68.23 9467 14 6344 3035 67.64 9379 15 6236 2918 68.12 9154 16 6306 2837 68.97 9143 17 6178 2837 68.53 9015 18 5845 2595 69.25 8440 19 5711 2565 69.01 8276 20 5699 2553 69.06 8252 21 5763 2558 69.26 8321 22 5447 2458 68.91 7905 23 5388 2443 68.80 7831 24 5310 2299 69.79 7609 25 5323 2414 68.80 7737 26 5182 2348 68.82 7530 27 4990 2168 69.71 7158 28 5036 2198 69.62 7234 29 5111 2059 71.28 7170 30 4779 2051 69.97 6830 31 4812 2060 70.02 6872 32 4726 1998 70.29 6724 33 4632 1884 71.09 6516 34 4583 1879 70.92 6462 35 4388 1847 70.38 6235 36 4381 1834 70.49 6215 37 4426 1776 71.36 6202 38 4313 1795 70.61 6108 39 4170 1680 71.28 5850 40 4168 1705 70.97 5873 41 3981 1656 70.62 5637 42 3834 1576 70.87 5410 43 3641 1528 70.44 5169 44 3855 1452 72.64 5307 45 3822 1453 72.45 5275 46 3551 1419 71.45 4970 47 3672 1385 72.61 5057 48 3405 1355 71.53 4760 49 3406 1268 72.87 4674 50 3315 1350 71.06 4665 51 3073 1272 70.72 4345 52 3211 1247 72.03 4458 53 2992 1232 70.83 4224 54 2974 1262 70.21 4236 55 3033 1223 71.26 4256 56 2875 1169 71.09 4044 57 2825 1178 70.57 4003 58 2756 1091 71.64 3847 59 2642 1051 71.54 3693 60 2646 1027 72.04 3673 61 2631 1023 72.00 3654 62 2513 1056 70.41 3569 63 2346 1001 70.09 3347 64 2388 981 70.88 3369 65 2356 929 71.72 3285 66 2242 943 70.39 3185 67 2200 936 70.15 3136 68 2177 865 71.56 3042 69 2144 895 70.55 3039 70 2061 800 72.04 2861 71 1959 866 69.35 2825 72 1951 837 69.98 2788 73 1923 766 71.51 2689 74 1809 815 68.94 2624 75 1721 707 70.88 2428 76 1758 742 70.32 2500 77 1647 705 70.03 2352 78 1450 720 66.82 2170 79 1287 613 67.74 1900 80 879 396 68.94 1275 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3644 21416 14.54 25060 2 1392 19233 6.75 20625 3 1541 18485 7.69 20026 4 737 18690 3.79 19427 5 849 16386 4.93 17235 6 1142 15784 6.75 16926 7 625 16321 3.69 16946 8 739 17203 4.12 17942 9 601 15187 3.81 15788 10 605 15446 3.77 16051 11 554 15475 3.46 16029 12 482 15415 3.03 15897 13 453 15072 2.92 15525 14 412 14643 2.74 15055 15 409 14567 2.73 14976 16 409 14404 2.76 14813 17 407 13876 2.85 14283 18 400 13828 2.81 14228 19 340 13271 2.50 13611 20 344 13136 2.55 13480 21 343 12851 2.60 13194 22 342 12367 2.69 12709 23 324 12560 2.51 12884 24 271 12438 2.13 12709 25 303 12135 2.44 12438 26 330 11800 2.72 12130 27 278 11847 2.29 12125 28 252 11368 2.17 11620 29 229 11859 1.89 12088 30 257 11316 2.22 11573 31 237 11119 2.09 11356 32 252 10679 2.31 10931 33 234 10816 2.12 11050 34 210 10334 1.99 10544 35 212 10107 2.05 10319 36 211 10106 2.05 10317 37 184 9621 1.88 9805 38 167 9558 1.72 9725 39 166 9594 1.70 9760 40 149 9289 1.58 9438 41 161 9127 1.73 9288 42 142 9037 1.55 9179 43 174 8867 1.92 9041 44 143 8529 1.65 8672 45 134 8365 1.58 8499 46 144 8122 1.74 8266 47 136 8085 1.65 8221 48 128 7979 1.58 8107 49 150 7746 1.90 7896 50 115 7207 1.57 7322 51 123 7306 1.66 7429 52 119 7041 1.66 7160 53 120 6880 1.71 7000 54 130 6794 1.88 6924 55 113 6666 1.67 6779 56 111 6607 1.65 6718 57 125 6380 1.92 6505 58 118 6127 1.89 6245 59 117 6290 1.83 6407 60 111 5950 1.83 6061 61 112 5746 1.91 5858 62 97 5746 1.66 5843 63 93 5663 1.62 5756 64 114 5370 2.08 5484 65 85 5177 1.62 5262 66 92 5223 1.73 5315 67 88 5090 1.70 5178 68 78 5016 1.53 5094 69 96 4775 1.97 4871 70 73 4748 1.51 4821 71 86 4578 1.84 4664 72 94 4540 2.03 4634 73 76 4369 1.71 4445 74 98 4336 2.21 4434 75 90 4222 2.09 4312 76 66 3980 1.63 4046 77 68 3797 1.76 3865 78 71 3495 1.99 3566 79 59 3117 1.86 3176 80 42 2089 1.97 2131 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9464 72237 11.58 81701 2 6559 60596 9.77 67155 3 4618 58267 7.34 62885 4 3410 56143 5.73 59553 5 3585 54159 6.21 57744 6 4347 49482 8.08 53829 7 2722 49445 5.22 52167 8 3000 47871 5.90 50871 9 3095 49065 5.93 52160 10 2795 48001 5.50 50796 11 2624 46693 5.32 49317 12 2517 46174 5.17 48691 13 2254 46368 4.64 48622 14 2093 46010 4.35 48103 15 2206 45950 4.58 48156 16 2029 45585 4.26 47614 17 1822 44705 3.92 46527 18 1830 43775 4.01 45605 19 1643 42644 3.71 44287 20 1603 41202 3.74 42805 21 1502 40944 3.54 42446 22 1441 40087 3.47 41528 23 1458 39316 3.58 40774 24 1302 39170 3.22 40472 25 1290 38234 3.26 39524 26 1289 37987 3.28 39276 27 1292 37282 3.35 38574 28 1187 36740 3.13 37927 29 1117 36136 3.00 37253 30 1056 35333 2.90 36389 31 1052 35771 2.86 36823 32 901 34270 2.56 35171 33 971 33626 2.81 34597 34 871 33594 2.53 34465 35 870 32872 2.58 33742 36 835 32222 2.53 33057 37 859 31796 2.63 32655 38 782 31018 2.46 31800 39 741 30420 2.38 31161 40 774 30358 2.49 31132 41 740 29675 2.43 30415 42 640 28871 2.17 29511 43 727 28043 2.53 28770 44 619 27203 2.22 27822 45 622 26891 2.26 27513 46 599 26696 2.19 27295 47 628 26388 2.32 27016 48 621 25644 2.36 26265 49 585 25422 2.25 26007 50 533 24298 2.15 24831 51 525 23574 2.18 24099 52 498 23574 2.07 24072 53 483 22645 2.09 23128 54 449 21939 2.01 22388 55 537 21563 2.43 22100 56 442 21270 2.04 21712 57 506 20742 2.38 21248 58 496 20298 2.39 20794 59 439 20209 2.13 20648 60 445 19342 2.25 19787 61 487 18664 2.54 19151 62 387 18376 2.06 18763 63 426 18171 2.29 18597 64 360 18140 1.95 18500 65 391 17373 2.20 17764 66 375 16803 2.18 17178 67 382 16681 2.24 17063 68 381 16485 2.26 16866 69 399 16070 2.42 16469 70 349 15727 2.17 16076 71 336 15327 2.15 15663 72 340 15040 2.21 15380 73 336 14411 2.28 14747 74 336 13867 2.37 14203 75 307 13552 2.22 13859 76 313 13283 2.30 13596 77 272 12625 2.11 12897 78 287 12068 2.32 12355 79 219 10657 2.01 10876 80 146 7110 2.01 7256