CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12766 7608 62.66 20374 2 14561 6816 68.12 21377 3 13454 6619 67.03 20073 4 12451 6246 66.59 18697 5 12434 6292 66.40 18726 6 12502 6022 67.49 18524 7 13220 6303 67.72 19523 8 12774 6022 67.96 18796 9 12878 5912 68.54 18790 10 13259 5847 69.40 19106 11 13577 6224 68.57 19801 12 13490 6024 69.13 19514 13 13618 5846 69.97 19464 14 13756 6015 69.58 19771 15 13852 5823 70.40 19675 16 13624 5889 69.82 19513 17 13656 5919 69.76 19575 18 14021 5757 70.89 19778 19 13832 5811 70.42 19643 20 13965 5877 70.38 19842 21 13938 5791 70.65 19729 22 13855 5760 70.63 19615 23 13917 5832 70.47 19749 24 13847 5754 70.64 19601 25 14163 5921 70.52 20084 26 14012 5856 70.53 19868 27 13968 5759 70.81 19727 28 14154 5748 71.12 19902 29 13940 5687 71.02 19627 30 14028 5696 71.12 19724 31 14125 5734 71.13 19859 32 14248 5895 70.73 20143 33 14294 5643 71.70 19937 34 14307 5745 71.35 20052 35 14302 5818 71.08 20120 36 13876 5734 70.76 19610 37 14227 5373 72.59 19600 38 13951 5532 71.61 19483 39 14266 5418 72.48 19684 40 14165 5557 71.82 19722 41 13840 5638 71.05 19478 42 13553 5288 71.93 18841 43 13475 5441 71.24 18916 44 13709 5519 71.30 19228 45 13480 5319 71.71 18799 46 13465 5258 71.92 18723 47 13366 5357 71.39 18723 48 13052 5138 71.75 18190 49 12931 5282 71.00 18213 50 12846 5280 70.87 18126 51 12745 5075 71.52 17820 52 12517 5158 70.82 17675 53 12200 4976 71.03 17176 54 12366 4954 71.40 17320 55 12380 4861 71.81 17241 56 12046 4974 70.78 17020 57 12143 4809 71.63 16952 58 11729 4809 70.92 16538 59 11772 4686 71.53 16458 60 11427 4685 70.92 16112 61 11280 4556 71.23 15836 62 11030 4605 70.55 15635 63 11042 4520 70.95 15562 64 10820 4513 70.57 15333 65 10677 4543 70.15 15220 66 10157 4286 70.32 14443 67 10436 4284 70.90 14720 68 10362 4232 71.00 14594 69 9825 4274 69.69 14099 70 9762 4123 70.31 13885 71 9889 4184 70.27 14073 72 9469 4041 70.09 13510 73 9410 4123 69.53 13533 74 9123 4078 69.11 13201 75 8832 3848 69.65 12680 76 8664 3910 68.90 12574 77 8265 3655 69.34 11920 78 7743 3538 68.64 11281 79 6276 2797 69.17 9073 80 2960 1390 68.05 4350 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4196 29540 12.44 33736 2 2593 30964 7.73 33557 3 2125 30227 6.57 32352 4 1493 30093 4.73 31586 5 1558 28902 5.11 30460 6 1728 29059 5.61 30787 7 1331 29154 4.37 30485 8 1360 30507 4.27 31867 9 1290 29363 4.21 30653 10 1211 29507 3.94 30718 11 1258 29505 4.09 30763 12 1172 30249 3.73 31421 13 1146 29815 3.70 30961 14 1115 29913 3.59 31028 15 1158 30433 3.67 31591 16 1186 30507 3.74 31693 17 1128 30387 3.58 31515 18 1171 30971 3.64 32142 19 1084 30460 3.44 31544 20 1025 30769 3.22 31794 21 1059 31358 3.27 32417 22 1102 30787 3.46 31889 23 1055 31212 3.27 32267 24 1093 31566 3.35 32659 25 1019 30954 3.19 31973 26 1088 30905 3.40 31993 27 1020 31560 3.13 32580 28 1019 31430 3.14 32449 29 1024 31581 3.14 32605 30 1036 31193 3.21 32229 31 1053 31650 3.22 32703 32 992 31863 3.02 32855 33 1087 31599 3.33 32686 34 1011 31005 3.16 32016 35 1000 31033 3.12 32033 36 924 31578 2.84 32502 37 937 30720 2.96 31657 38 898 31159 2.80 32057 39 904 31088 2.83 31992 40 859 30698 2.72 31557 41 989 30971 3.09 31960 42 881 30641 2.79 31522 43 820 30280 2.64 31100 44 838 29752 2.74 30590 45 863 30102 2.79 30965 46 867 29480 2.86 30347 47 856 29067 2.86 29923 48 813 29481 2.68 30294 49 797 28866 2.69 29663 50 741 28300 2.55 29041 51 732 28525 2.50 29257 52 746 27756 2.62 28502 53 693 28020 2.41 28713 54 652 27420 2.32 28072 55 682 27393 2.43 28075 56 643 27065 2.32 27708 57 665 26922 2.41 27587 58 633 26584 2.33 27217 59 659 26039 2.47 26698 60 577 25947 2.18 26524 61 605 25377 2.33 25982 62 602 25173 2.34 25775 63 535 24760 2.12 25295 64 510 24418 2.05 24928 65 572 23656 2.36 24228 66 531 23798 2.18 24329 67 491 23491 2.05 23982 68 493 23016 2.10 23509 69 441 23099 1.87 23540 70 465 22297 2.04 22762 71 464 21918 2.07 22382 72 464 21764 2.09 22228 73 483 21055 2.24 21538 74 455 21035 2.12 21490 75 490 20976 2.28 21466 76 470 20247 2.27 20717 77 470 19243 2.38 19713 78 414 18190 2.23 18604 79 384 14531 2.57 14915 80 172 6734 2.49 6906 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16092 99369 13.94 115461 2 14755 100342 12.82 115097 3 14893 101108 12.84 116001 4 13716 100755 11.98 114471 5 12901 98559 11.57 111460 6 13255 95512 12.19 108767 7 12578 95198 11.67 107776 8 12003 94829 11.24 106832 9 12630 96342 11.59 108972 10 12699 96951 11.58 109650 11 12291 95262 11.43 107553 12 12575 96386 11.54 108961 13 12817 97844 11.58 110661 14 12223 98851 11.00 111074 15 12834 100056 11.37 112890 16 12898 101360 11.29 114258 17 12203 101475 10.73 113678 18 12435 102627 10.81 115062 19 12611 102705 10.94 115316 20 12450 102536 10.83 114986 21 12930 102947 11.16 115877 22 12642 102432 10.99 115074 23 11821 102695 10.32 114516 24 12442 102183 10.85 114625 25 12056 102877 10.49 114933 26 11550 102335 10.14 113885 27 11885 103105 10.34 114990 28 11681 103181 10.17 114862 29 11276 102524 9.91 113800 30 11425 102644 10.02 114069 31 11141 104444 9.64 115585 32 10545 102883 9.30 113428 33 10675 101830 9.49 112505 34 10554 101642 9.41 112196 35 9980 101808 8.93 111788 36 10092 101603 9.04 111695 37 10152 101488 9.09 111640 38 9433 100256 8.60 109689 39 9364 100567 8.52 109931 40 9249 100187 8.45 109436 41 8764 99519 8.09 108283 42 8655 98493 8.08 107148 43 8454 97876 7.95 106330 44 7974 96237 7.65 104211 45 7695 95366 7.47 103061 46 7606 95402 7.38 103008 47 7173 93702 7.11 100875 48 6933 93220 6.92 100153 49 6591 92769 6.63 99360 50 6146 90406 6.37 96552 51 6098 88913 6.42 95011 52 5862 89113 6.17 94975 53 5525 87025 5.97 92550 54 5260 85797 5.78 91057 55 5109 85019 5.67 90128 56 4698 83582 5.32 88280 57 4505 83399 5.12 87904 58 4353 81284 5.08 85637 59 4202 80611 4.95 84813 60 3938 79269 4.73 83207 61 3692 78537 4.49 82229 62 3370 76743 4.21 80113 63 3339 76183 4.20 79522 64 3185 75733 4.04 78918 65 2908 73775 3.79 76683 66 3011 72488 3.99 75499 67 2892 71921 3.87 74813 68 2643 71644 3.56 74287 69 2519 70608 3.44 73127 70 2514 68822 3.52 71336 71 2421 67740 3.45 70161 72 2318 67474 3.32 69792 73 2291 65051 3.40 67342 74 2192 63800 3.32 65992 75 2116 62254 3.29 64370 76 2152 61542 3.38 63694 77 2031 58671 3.35 60702 78 1878 55027 3.30 56905 79 1546 45246 3.30 46792 80 669 20542 3.15 21211 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8965 5327 62.73 14292 2 9540 4408 68.40 13948 3 8647 4181 67.41 12828 4 6775 3818 63.96 10593 5 6604 3702 64.08 10306 6 6564 3489 65.29 10053 7 6683 3722 64.23 10405 8 6786 3367 66.84 10153 9 6569 3226 67.06 9795 10 6666 3230 67.36 9896 11 6638 3316 66.69 9954 12 6554 3231 66.98 9785 13 6561 3034 68.38 9595 14 6405 3038 67.83 9443 15 6392 2922 68.63 9314 16 6195 2822 68.70 9017 17 6086 2955 67.32 9041 18 5906 2642 69.09 8548 19 5736 2553 69.20 8289 20 5596 2588 68.38 8184 21 5601 2515 69.01 8116 22 5352 2464 68.47 7816 23 5293 2414 68.68 7707 24 5295 2344 69.32 7639 25 5239 2498 67.71 7737 26 5135 2293 69.13 7428 27 5082 2143 70.34 7225 28 5110 2217 69.74 7327 29 5044 2088 70.72 7132 30 4810 2006 70.57 6816 31 4993 1953 71.88 6946 32 4755 1944 70.98 6699 33 4656 1907 70.94 6563 34 4739 1890 71.49 6629 35 4529 1807 71.48 6336 36 4437 1851 70.56 6288 37 4290 1751 71.01 6041 38 4208 1738 70.77 5946 39 4079 1696 70.63 5775 40 4205 1698 71.23 5903 41 3968 1595 71.33 5563 42 3866 1526 71.70 5392 43 3912 1485 72.48 5397 44 3770 1493 71.63 5263 45 3621 1443 71.50 5064 46 3560 1497 70.40 5057 47 3510 1452 70.74 4962 48 3486 1331 72.37 4817 49 3314 1337 71.25 4651 50 3273 1294 71.67 4567 51 3162 1194 72.59 4356 52 3115 1234 71.63 4349 53 3063 1204 71.78 4267 54 2947 1189 71.25 4136 55 2998 1204 71.35 4202 56 2937 1133 72.16 4070 57 2872 1160 71.23 4032 58 2699 1091 71.21 3790 59 2653 1027 72.09 3680 60 2656 1050 71.67 3706 61 2561 1070 70.53 3631 62 2501 987 71.70 3488 63 2455 1014 70.77 3469 64 2374 983 70.72 3357 65 2235 902 71.25 3137 66 2173 911 70.46 3084 67 2237 929 70.66 3166 68 2130 873 70.93 3003 69 2117 837 71.67 2954 70 2048 877 70.02 2925 71 1983 780 71.77 2763 72 1952 801 70.90 2753 73 1945 790 71.12 2735 74 1804 806 69.12 2610 75 1760 772 69.51 2532 76 1673 707 70.29 2380 77 1599 705 69.40 2304 78 1498 669 69.13 2167 79 1272 574 68.91 1846 80 829 397 67.62 1226 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3533 21382 14.18 24915 2 1406 18930 6.91 20336 3 1469 18448 7.38 19917 4 779 18671 4.01 19450 5 824 16312 4.81 17136 6 1148 16242 6.60 17390 7 654 16194 3.88 16848 8 733 17061 4.12 17794 9 558 15451 3.49 16009 10 612 15032 3.91 15644 11 552 15337 3.47 15889 12 461 15419 2.90 15880 13 497 15086 3.19 15583 14 496 14735 3.26 15231 15 441 14769 2.90 15210 16 419 14642 2.78 15061 17 419 13846 2.94 14265 18 404 13706 2.86 14110 19 366 13478 2.64 13844 20 367 13298 2.69 13665 21 321 12898 2.43 13219 22 305 12567 2.37 12872 23 309 12391 2.43 12700 24 308 12517 2.40 12825 25 302 11868 2.48 12170 26 306 11646 2.56 11952 27 298 11653 2.49 11951 28 259 11519 2.20 11778 29 239 11500 2.04 11739 30 236 11199 2.06 11435 31 269 10844 2.42 11113 32 199 10871 1.80 11070 33 242 10752 2.20 10994 34 215 10283 2.05 10498 35 201 10259 1.92 10460 36 190 9902 1.88 10092 37 197 9681 1.99 9878 38 197 9575 2.02 9772 39 168 9515 1.73 9683 40 176 9191 1.88 9367 41 174 9226 1.85 9400 42 148 8929 1.63 9077 43 163 8628 1.85 8791 44 154 8523 1.77 8677 45 134 8298 1.59 8432 46 136 8248 1.62 8384 47 141 7923 1.75 8064 48 135 7741 1.71 7876 49 160 7477 2.10 7637 50 150 7395 1.99 7545 51 122 7449 1.61 7571 52 117 7080 1.63 7197 53 119 6868 1.70 6987 54 114 6758 1.66 6872 55 126 6711 1.84 6837 56 114 6490 1.73 6604 57 122 6490 1.85 6612 58 115 6318 1.79 6433 59 122 6204 1.93 6326 60 121 5913 2.01 6034 61 107 5752 1.83 5859 62 99 5551 1.75 5650 63 87 5600 1.53 5687 64 106 5317 1.95 5423 65 101 5352 1.85 5453 66 85 5080 1.65 5165 67 91 4957 1.80 5048 68 80 4886 1.61 4966 69 84 4866 1.70 4950 70 80 4650 1.69 4730 71 71 4491 1.56 4562 72 86 4440 1.90 4526 73 79 4339 1.79 4418 74 68 4202 1.59 4270 75 97 4092 2.32 4189 76 58 4021 1.42 4079 77 69 3814 1.78 3883 78 51 3563 1.41 3614 79 61 3026 1.98 3087 80 42 2015 2.04 2057 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9353 71825 11.52 81178 2 6544 60636 9.74 67180 3 4466 58347 7.11 62813 4 3462 55759 5.85 59221 5 3592 53787 6.26 57379 6 4476 49572 8.28 54048 7 2700 49681 5.15 52381 8 2870 47919 5.65 50789 9 2952 48173 5.77 51125 10 2826 48071 5.55 50897 11 2685 46291 5.48 48976 12 2458 46107 5.06 48565 13 2254 46871 4.59 49125 14 2136 45850 4.45 47986 15 2261 45912 4.69 48173 16 2148 45658 4.49 47806 17 1941 44585 4.17 46526 18 1847 43612 4.06 45459 19 1685 42757 3.79 44442 20 1634 41682 3.77 43316 21 1498 41181 3.51 42679 22 1485 40377 3.55 41862 23 1432 39641 3.49 41073 24 1402 39160 3.46 40562 25 1367 38566 3.42 39933 26 1239 37779 3.18 39018 27 1323 37243 3.43 38566 28 1210 36574 3.20 37784 29 1145 35863 3.09 37008 30 1076 35723 2.92 36799 31 1093 35927 2.95 37020 32 963 34461 2.72 35424 33 1014 33606 2.93 34620 34 910 33347 2.66 34257 35 886 32683 2.64 33569 36 849 32603 2.54 33452 37 877 31923 2.67 32800 38 783 30966 2.47 31749 39 784 30511 2.51 31295 40 723 30271 2.33 30994 41 763 29554 2.52 30317 42 716 28556 2.45 29272 43 707 28503 2.42 29210 44 703 27244 2.52 27947 45 609 27087 2.20 27696 46 658 26562 2.42 27220 47 651 25721 2.47 26372 48 651 25706 2.47 26357 49 579 25572 2.21 26151 50 592 24319 2.38 24911 51 578 23543 2.40 24121 52 578 23498 2.40 24076 53 520 22406 2.27 22926 54 556 21866 2.48 22422 55 553 21708 2.48 22261 56 444 21121 2.06 21565 57 509 20890 2.38 21399 58 510 20403 2.44 20913 59 487 19771 2.40 20258 60 461 19263 2.34 19724 61 441 18874 2.28 19315 62 421 18702 2.20 19123 63 432 18308 2.31 18740 64 442 18059 2.39 18501 65 393 17330 2.22 17723 66 455 16840 2.63 17295 67 381 16604 2.24 16985 68 411 16402 2.44 16813 69 399 16161 2.41 16560 70 379 15689 2.36 16068 71 380 15161 2.45 15541 72 333 15068 2.16 15401 73 333 14328 2.27 14661 74 282 13886 1.99 14168 75 320 13609 2.30 13929 76 295 13199 2.19 13494 77 273 12867 2.08 13140 78 274 11866 2.26 12140 79 230 10490 2.15 10720 80 152 7054 2.11 7206