CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12837 7479 63.19 20316 2 14404 6729 68.16 21133 3 13563 6892 66.31 20455 4 12566 6328 66.51 18894 5 12361 6144 66.80 18505 6 12525 6030 67.50 18555 7 13078 6449 66.97 19527 8 12794 6068 67.83 18862 9 12960 5829 68.98 18789 10 13524 5873 69.72 19397 11 13689 6108 69.15 19797 12 13788 5934 69.91 19722 13 13379 5951 69.21 19330 14 13641 6094 69.12 19735 15 13671 5935 69.73 19606 16 13708 5833 70.15 19541 17 13640 5931 69.69 19571 18 13713 5801 70.27 19514 19 13950 5851 70.45 19801 20 13766 5955 69.80 19721 21 13877 5947 70.00 19824 22 13982 5868 70.44 19850 23 13936 5969 70.01 19905 24 14250 5705 71.41 19955 25 14206 5933 70.54 20139 26 13850 5976 69.86 19826 27 14068 5873 70.55 19941 28 14116 5795 70.90 19911 29 14056 5789 70.83 19845 30 14028 5744 70.95 19772 31 14252 5825 70.99 20077 32 14233 5769 71.16 20002 33 14196 5570 71.82 19766 34 14475 5724 71.66 20199 35 14172 5676 71.40 19848 36 13765 5612 71.04 19377 37 14071 5706 71.15 19777 38 13890 5717 70.84 19607 39 14132 5555 71.78 19687 40 14269 5679 71.53 19948 41 13785 5479 71.56 19264 42 13701 5401 71.73 19102 43 13641 5500 71.27 19141 44 13776 5461 71.61 19237 45 13394 5222 71.95 18616 46 13391 5318 71.58 18709 47 13337 5363 71.32 18700 48 13160 5418 70.84 18578 49 13137 5327 71.15 18464 50 13006 5284 71.11 18290 51 12624 5148 71.03 17772 52 12585 5159 70.93 17744 53 12303 4913 71.46 17216 54 12237 5049 70.79 17286 55 12267 4891 71.49 17158 56 12028 4914 71.00 16942 57 12298 4874 71.62 17172 58 11830 4839 70.97 16669 59 11509 4753 70.77 16262 60 11399 4695 70.83 16094 61 11237 4634 70.80 15871 62 11146 4572 70.91 15718 63 11109 4549 70.95 15658 64 10661 4599 69.86 15260 65 10667 4445 70.59 15112 66 10334 4436 69.97 14770 67 10428 4241 71.09 14669 68 10174 4231 70.63 14405 69 10037 4210 70.45 14247 70 9917 4213 70.18 14130 71 9779 4113 70.39 13892 72 9540 4016 70.37 13556 73 9284 4137 69.18 13421 74 9072 3913 69.87 12985 75 8837 3986 68.92 12823 76 8776 3947 68.98 12723 77 8562 3794 69.29 12356 78 7828 3601 68.49 11429 79 6377 2915 68.63 9292 80 2869 1445 66.50 4314 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4157 29583 12.32 33740 2 2559 30803 7.67 33362 3 2038 30275 6.31 32313 4 1546 30115 4.88 31661 5 1563 28813 5.15 30376 6 1732 29082 5.62 30814 7 1381 29465 4.48 30846 8 1313 30102 4.18 31415 9 1280 29381 4.17 30661 10 1229 29441 4.01 30670 11 1226 29827 3.95 31053 12 1200 30047 3.84 31247 13 1259 29862 4.05 31121 14 1136 30124 3.63 31260 15 1145 30811 3.58 31956 16 1175 30104 3.76 31279 17 1100 30578 3.47 31678 18 1122 30934 3.50 32056 19 1141 30670 3.59 31811 20 1123 30628 3.54 31751 21 1069 31173 3.32 32242 22 1155 30511 3.65 31666 23 990 31289 3.07 32279 24 1090 31164 3.38 32254 25 1043 31033 3.25 32076 26 1115 31092 3.46 32207 27 1018 31680 3.11 32698 28 1093 31191 3.39 32284 29 1066 32021 3.22 33087 30 1024 31458 3.15 32482 31 1018 31688 3.11 32706 32 1036 31759 3.16 32795 33 1108 31899 3.36 33007 34 1006 31087 3.13 32093 35 1046 31211 3.24 32257 36 859 31407 2.66 32266 37 1000 30883 3.14 31883 38 950 30778 2.99 31728 39 901 31442 2.79 32343 40 854 30791 2.70 31645 41 913 30993 2.86 31906 42 885 30781 2.79 31666 43 903 30172 2.91 31075 44 822 29797 2.68 30619 45 848 30615 2.70 31463 46 808 29617 2.66 30425 47 791 29405 2.62 30196 48 809 29195 2.70 30004 49 763 28757 2.58 29520 50 778 28597 2.65 29375 51 798 28338 2.74 29136 52 752 28153 2.60 28905 53 705 27388 2.51 28093 54 651 27664 2.30 28315 55 679 27287 2.43 27966 56 649 27197 2.33 27846 57 641 27078 2.31 27719 58 646 26347 2.39 26993 59 621 26258 2.31 26879 60 592 26007 2.23 26599 61 589 25056 2.30 25645 62 592 24915 2.32 25507 63 565 25049 2.21 25614 64 556 24589 2.21 25145 65 502 24115 2.04 24617 66 472 24002 1.93 24474 67 507 23400 2.12 23907 68 481 23127 2.04 23608 69 493 22759 2.12 23252 70 460 22217 2.03 22677 71 508 21697 2.29 22205 72 449 21392 2.06 21841 73 457 21131 2.12 21588 74 447 20981 2.09 21428 75 470 20880 2.20 21350 76 464 20119 2.25 20583 77 460 19599 2.29 20059 78 430 18057 2.33 18487 79 367 14713 2.43 15080 80 162 7019 2.26 7181 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16125 99734 13.92 115859 2 14911 100936 12.87 115847 3 14638 101948 12.56 116586 4 13369 101366 11.65 114735 5 13043 98914 11.65 111957 6 13403 94974 12.37 108377 7 12688 94898 11.79 107586 8 12207 94321 11.46 106528 9 12809 95557 11.82 108366 10 12832 97036 11.68 109868 11 12458 95303 11.56 107761 12 12616 96425 11.57 109041 13 12501 97573 11.36 110074 14 12298 98793 11.07 111091 15 13033 99791 11.55 112824 16 13050 100956 11.45 114006 17 12366 101187 10.89 113553 18 12519 102632 10.87 115151 19 12319 103227 10.66 115546 20 12320 102938 10.69 115258 21 12674 103070 10.95 115744 22 12545 102845 10.87 115390 23 11820 103417 10.26 115237 24 12222 101731 10.73 113953 25 11974 102667 10.44 114641 26 11566 102776 10.12 114342 27 11862 102484 10.37 114346 28 11875 103385 10.30 115260 29 11523 102912 10.07 114435 30 11476 102575 10.06 114051 31 11104 104951 9.57 116055 32 10545 102553 9.32 113098 33 10562 101794 9.40 112356 34 10524 102048 9.35 112572 35 10012 101869 8.95 111881 36 9983 101128 8.98 111111 37 9999 100936 9.01 110935 38 9502 99899 8.69 109401 39 9324 100148 8.52 109472 40 9234 100852 8.39 110086 41 8618 99775 7.95 108393 42 8553 98751 7.97 107304 43 8472 97710 7.98 106182 44 7889 96082 7.59 103971 45 7449 95215 7.26 102664 46 7509 94963 7.33 102472 47 7075 93474 7.04 100549 48 6942 93395 6.92 100337 49 6817 92540 6.86 99357 50 6279 90041 6.52 96320 51 6058 88864 6.38 94922 52 5791 89044 6.11 94835 53 5487 86698 5.95 92185 54 5385 86126 5.88 91511 55 5250 84985 5.82 90235 56 4832 83788 5.45 88620 57 4523 83586 5.13 88109 58 4280 81808 4.97 86088 59 4146 81081 4.86 85227 60 3787 79233 4.56 83020 61 3705 78051 4.53 81756 62 3444 76720 4.30 80164 63 3381 76262 4.25 79643 64 3176 75984 4.01 79160 65 2941 73747 3.84 76688 66 2851 72370 3.79 75221 67 2841 72264 3.78 75105 68 2607 71408 3.52 74015 69 2570 70549 3.51 73119 70 2468 68749 3.47 71217 71 2399 68338 3.39 70737 72 2268 67279 3.26 69547 73 2367 65486 3.49 67853 74 2128 64085 3.21 66213 75 2174 62995 3.34 65169 76 2121 61563 3.33 63684 77 1996 58659 3.29 60655 78 1982 55034 3.48 57016 79 1478 45287 3.16 46765 80 647 20457 3.07 21104 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8993 5545 61.86 14538 2 9596 4407 68.53 14003 3 8638 4177 67.41 12815 4 6646 3862 63.25 10508 5 6581 3648 64.34 10229 6 6618 3436 65.82 10054 7 6834 3764 64.48 10598 8 6568 3230 67.03 9798 9 6592 3201 67.31 9793 10 6648 3269 67.04 9917 11 6757 3374 66.70 10131 12 6580 3228 67.09 9808 13 6435 3104 67.46 9539 14 6394 3152 66.98 9546 15 6211 2958 67.74 9169 16 6156 2854 68.32 9010 17 6106 2818 68.42 8924 18 5880 2650 68.93 8530 19 5861 2563 69.58 8424 20 5611 2602 68.32 8213 21 5607 2575 68.53 8182 22 5442 2436 69.08 7878 23 5382 2341 69.69 7723 24 5257 2308 69.49 7565 25 5261 2417 68.52 7678 26 5066 2349 68.32 7415 27 5078 2150 70.25 7228 28 5060 2104 70.63 7164 29 4811 2200 68.62 7011 30 4897 2084 70.15 6981 31 4660 2058 69.37 6718 32 4692 2016 69.95 6708 33 4753 2013 70.25 6766 34 4571 1919 70.43 6490 35 4443 1744 71.81 6187 36 4353 1746 71.37 6099 37 4403 1766 71.37 6169 38 4339 1734 71.45 6073 39 4295 1698 71.67 5993 40 4133 1609 71.98 5742 41 3918 1534 71.86 5452 42 3970 1559 71.80 5529 43 3716 1537 70.74 5253 44 3638 1517 70.57 5155 45 3694 1416 72.29 5110 46 3645 1424 71.91 5069 47 3547 1415 71.48 4962 48 3399 1355 71.50 4754 49 3345 1437 69.95 4782 50 3301 1312 71.56 4613 51 3191 1301 71.04 4492 52 3099 1227 71.64 4326 53 3049 1230 71.25 4279 54 3035 1210 71.50 4245 55 2887 1153 71.46 4040 56 2814 1179 70.47 3993 57 2930 1104 72.63 4034 58 2737 1120 70.96 3857 59 2680 1102 70.86 3782 60 2644 1011 72.34 3655 61 2562 1061 70.71 3623 62 2581 1060 70.89 3641 63 2451 985 71.33 3436 64 2398 992 70.74 3390 65 2335 915 71.85 3250 66 2227 912 70.95 3139 67 2174 901 70.70 3075 68 2112 891 70.33 3003 69 2033 862 70.22 2895 70 2146 831 72.09 2977 71 1965 835 70.18 2800 72 1965 827 70.38 2792 73 1935 794 70.91 2729 74 1796 762 70.21 2558 75 1709 728 70.13 2437 76 1729 743 69.94 2472 77 1656 769 68.29 2425 78 1548 702 68.80 2250 79 1252 602 67.53 1854 80 843 434 66.01 1277 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3556 21226 14.35 24782 2 1443 19003 7.06 20446 3 1488 18588 7.41 20076 4 748 18640 3.86 19388 5 879 16427 5.08 17306 6 1128 16033 6.57 17161 7 653 16164 3.88 16817 8 823 17127 4.58 17950 9 602 15460 3.75 16062 10 627 15182 3.97 15809 11 553 15181 3.51 15734 12 509 15519 3.18 16028 13 535 15049 3.43 15584 14 471 14577 3.13 15048 15 428 14683 2.83 15111 16 447 14372 3.02 14819 17 427 13826 3.00 14253 18 356 13837 2.51 14193 19 356 13366 2.59 13722 20 382 12998 2.86 13380 21 358 13212 2.64 13570 22 325 12552 2.52 12877 23 287 12443 2.25 12730 24 263 12448 2.07 12711 25 297 12150 2.39 12447 26 302 11915 2.47 12217 27 282 11741 2.35 12023 28 250 11536 2.12 11786 29 278 11480 2.36 11758 30 261 10977 2.32 11238 31 236 11050 2.09 11286 32 217 10757 1.98 10974 33 221 10832 2.00 11053 34 212 10172 2.04 10384 35 206 10114 2.00 10320 36 206 9943 2.03 10149 37 204 9766 2.05 9970 38 182 9763 1.83 9945 39 179 9634 1.82 9813 40 180 9219 1.92 9399 41 176 9191 1.88 9367 42 160 8865 1.77 9025 43 157 8790 1.75 8947 44 134 8458 1.56 8592 45 144 8404 1.68 8548 46 148 8184 1.78 8332 47 155 8043 1.89 8198 48 145 7664 1.86 7809 49 131 7632 1.69 7763 50 134 7396 1.78 7530 51 131 7238 1.78 7369 52 104 6955 1.47 7059 53 130 7000 1.82 7130 54 107 6900 1.53 7007 55 118 6788 1.71 6906 56 122 6536 1.83 6658 57 123 6458 1.87 6581 58 112 6236 1.76 6348 59 122 6194 1.93 6316 60 100 6093 1.61 6193 61 125 5633 2.17 5758 62 98 5663 1.70 5761 63 100 5591 1.76 5691 64 110 5409 1.99 5519 65 99 5251 1.85 5350 66 72 5242 1.35 5314 67 89 5052 1.73 5141 68 80 4987 1.58 5067 69 75 4843 1.53 4918 70 74 4589 1.59 4663 71 96 4514 2.08 4610 72 73 4498 1.60 4571 73 91 4487 1.99 4578 74 82 4303 1.87 4385 75 70 4189 1.64 4259 76 85 4063 2.05 4148 77 69 3911 1.73 3980 78 58 3570 1.60 3628 79 53 2955 1.76 3008 80 33 2089 1.56 2122 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9528 72131 11.67 81659 2 6588 60888 9.76 67476 3 4605 58475 7.30 63080 4 3357 56186 5.64 59543 5 3558 54190 6.16 57748 6 4526 49803 8.33 54329 7 2830 49346 5.42 52176 8 2938 48093 5.76 51031 9 3075 48710 5.94 51785 10 2927 47790 5.77 50717 11 2691 46512 5.47 49203 12 2456 46166 5.05 48622 13 2319 46273 4.77 48592 14 2058 46406 4.25 48464 15 2196 46131 4.54 48327 16 1992 45880 4.16 47872 17 1893 44986 4.04 46879 18 1761 43963 3.85 45724 19 1697 42593 3.83 44290 20 1542 41999 3.54 43541 21 1620 41292 3.78 42912 22 1446 40296 3.46 41742 23 1471 39736 3.57 41207 24 1408 38852 3.50 40260 25 1414 38215 3.57 39629 26 1265 37890 3.23 39155 27 1401 37243 3.63 38644 28 1250 36700 3.29 37950 29 1133 36121 3.04 37254 30 1166 35475 3.18 36641 31 1134 35610 3.09 36744 32 976 34094 2.78 35070 33 1004 33526 2.91 34530 34 966 33435 2.81 34401 35 879 32785 2.61 33664 36 905 32811 2.68 33716 37 878 31851 2.68 32729 38 813 30808 2.57 31621 39 777 30631 2.47 31408 40 796 30247 2.56 31043 41 735 29545 2.43 30280 42 694 28824 2.35 29518 43 684 28416 2.35 29100 44 644 27633 2.28 28277 45 662 26874 2.40 27536 46 612 26523 2.26 27135 47 667 25914 2.51 26581 48 654 25919 2.46 26573 49 614 25437 2.36 26051 50 598 24243 2.41 24841 51 539 23853 2.21 24392 52 566 23797 2.32 24363 53 576 22634 2.48 23210 54 526 22121 2.32 22647 55 522 21580 2.36 22102 56 454 21194 2.10 21648 57 537 20678 2.53 21215 58 473 20251 2.28 20724 59 468 20059 2.28 20527 60 437 19506 2.19 19943 61 447 18625 2.34 19072 62 449 18349 2.39 18798 63 415 18346 2.21 18761 64 406 18106 2.19 18512 65 435 17323 2.45 17758 66 427 16928 2.46 17355 67 398 16557 2.35 16955 68 395 16840 2.29 17235 69 338 16229 2.04 16567 70 371 15796 2.29 16167 71 376 15317 2.40 15693 72 373 15142 2.40 15515 73 357 14479 2.41 14836 74 331 14018 2.31 14349 75 322 13661 2.30 13983 76 331 13338 2.42 13669 77 281 12757 2.16 13038 78 279 11840 2.30 12119 79 237 10489 2.21 10726 80 147 7133 2.02 7280