CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12667 7484 62.86 20151 2 14537 6888 67.85 21425 3 13541 6755 66.72 20296 4 12452 6346 66.24 18798 5 12215 6266 66.09 18481 6 12489 5928 67.81 18417 7 13020 6304 67.38 19324 8 12816 5996 68.13 18812 9 12957 5994 68.37 18951 10 13158 5972 68.78 19130 11 13509 6174 68.63 19683 12 13863 6046 69.63 19909 13 13653 5822 70.11 19475 14 13591 5986 69.42 19577 15 13721 5910 69.89 19631 16 13810 5873 70.16 19683 17 13637 5975 69.53 19612 18 13842 5747 70.66 19589 19 13944 5692 71.01 19636 20 13822 5854 70.25 19676 21 13819 5803 70.43 19622 22 14090 5852 70.65 19942 23 13688 5893 69.90 19581 24 14060 5779 70.87 19839 25 13847 5956 69.92 19803 26 13910 6057 69.66 19967 27 14100 5748 71.04 19848 28 14310 5866 70.93 20176 29 14284 5781 71.19 20065 30 13948 5662 71.13 19610 31 14446 5751 71.53 20197 32 13947 5731 70.88 19678 33 14172 5750 71.14 19922 34 14345 5749 71.39 20094 35 13998 5738 70.93 19736 36 14143 5614 71.58 19757 37 14106 5696 71.24 19802 38 14171 5700 71.31 19871 39 14197 5650 71.53 19847 40 14097 5608 71.54 19705 41 14075 5579 71.61 19654 42 13445 5516 70.91 18961 43 13556 5466 71.26 19022 44 13360 5475 70.93 18835 45 13380 5246 71.84 18626 46 13253 5374 71.15 18627 47 13416 5420 71.23 18836 48 12910 5179 71.37 18089 49 12720 5316 70.53 18036 50 12822 5358 70.53 18180 51 12555 5101 71.11 17656 52 12558 5130 71.00 17688 53 12556 4982 71.59 17538 54 12159 4900 71.28 17059 55 12263 4970 71.16 17233 56 12225 4955 71.16 17180 57 12229 4893 71.42 17122 58 11741 4808 70.95 16549 59 11592 4785 70.78 16377 60 11366 4819 70.23 16185 61 11222 4653 70.69 15875 62 11078 4677 70.31 15755 63 10984 4538 70.76 15522 64 10780 4517 70.47 15297 65 10686 4483 70.45 15169 66 10627 4390 70.77 15017 67 10267 4363 70.18 14630 68 9943 4238 70.11 14181 69 10016 4382 69.57 14398 70 9751 4242 69.68 13993 71 9663 4124 70.09 13787 72 9496 4086 69.92 13582 73 9590 4066 70.23 13656 74 9118 4010 69.45 13128 75 8944 3901 69.63 12845 76 8541 3988 68.17 12529 77 8523 3710 69.67 12233 78 7667 3567 68.25 11234 79 6277 3017 67.54 9294 80 2955 1404 67.79 4359 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4215 29608 12.46 33823 2 2595 30621 7.81 33216 3 2036 30301 6.30 32337 4 1515 30334 4.76 31849 5 1524 28850 5.02 30374 6 1724 29158 5.58 30882 7 1357 29263 4.43 30620 8 1392 30496 4.37 31888 9 1333 29208 4.36 30541 10 1256 29833 4.04 31089 11 1338 29720 4.31 31058 12 1141 30260 3.63 31401 13 1264 29991 4.04 31255 14 1167 29849 3.76 31016 15 1154 30719 3.62 31873 16 1139 30488 3.60 31627 17 1059 30405 3.37 31464 18 1133 31037 3.52 32170 19 1059 30787 3.33 31846 20 1114 30548 3.52 31662 21 1112 30966 3.47 32078 22 1118 30785 3.50 31903 23 1037 31075 3.23 32112 24 1084 31446 3.33 32530 25 1050 31155 3.26 32205 26 1059 31138 3.29 32197 27 994 31988 3.01 32982 28 1055 31455 3.25 32510 29 1006 31944 3.05 32950 30 1004 31590 3.08 32594 31 1078 31792 3.28 32870 32 1031 31487 3.17 32518 33 1126 31732 3.43 32858 34 1039 31138 3.23 32177 35 984 31139 3.06 32123 36 917 31163 2.86 32080 37 995 31170 3.09 32165 38 1007 31292 3.12 32299 39 952 31549 2.93 32501 40 898 31018 2.81 31916 41 920 30636 2.92 31556 42 871 31032 2.73 31903 43 841 30003 2.73 30844 44 885 29854 2.88 30739 45 823 30371 2.64 31194 46 811 29667 2.66 30478 47 866 29533 2.85 30399 48 780 29024 2.62 29804 49 813 28769 2.75 29582 50 781 28121 2.70 28902 51 742 28723 2.52 29465 52 699 28145 2.42 28844 53 736 27841 2.58 28577 54 673 27568 2.38 28241 55 701 27207 2.51 27908 56 703 26954 2.54 27657 57 603 27058 2.18 27661 58 626 26595 2.30 27221 59 669 26097 2.50 26766 60 597 26150 2.23 26747 61 612 25323 2.36 25935 62 544 24769 2.15 25313 63 557 24876 2.19 25433 64 511 24356 2.05 24867 65 522 24014 2.13 24536 66 553 23743 2.28 24296 67 498 23184 2.10 23682 68 489 22889 2.09 23378 69 467 22697 2.02 23164 70 459 22472 2.00 22931 71 484 21893 2.16 22377 72 440 21618 1.99 22058 73 454 21307 2.09 21761 74 462 20935 2.16 21397 75 442 20755 2.09 21197 76 462 20167 2.24 20629 77 444 19339 2.24 19783 78 439 18298 2.34 18737 79 376 14751 2.49 15127 80 158 6982 2.21 7140 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16060 99796 13.86 115856 2 14971 100417 12.97 115388 3 14686 101869 12.60 116555 4 13549 100841 11.84 114390 5 13268 99395 11.78 112663 6 13093 95022 12.11 108115 7 12642 95563 11.68 108205 8 12155 94458 11.40 106613 9 12767 95528 11.79 108295 10 12705 96494 11.63 109199 11 12396 95179 11.52 107575 12 12882 96098 11.82 108980 13 12590 97979 11.39 110569 14 12338 98936 11.09 111274 15 12885 99717 11.44 112602 16 12986 100623 11.43 113609 17 12310 101441 10.82 113751 18 12465 102314 10.86 114779 19 12500 102943 10.83 115443 20 12298 102847 10.68 115145 21 12896 102850 11.14 115746 22 12581 101939 10.99 114520 23 11773 102194 10.33 113967 24 12165 101552 10.70 113717 25 12110 102849 10.53 114959 26 11564 102651 10.12 114215 27 11673 102254 10.25 113927 28 11876 102626 10.37 114502 29 11507 102630 10.08 114137 30 11488 102481 10.08 113969 31 11217 104125 9.72 115342 32 10531 102302 9.33 112833 33 10382 101355 9.29 111737 34 10507 101756 9.36 112263 35 10000 101626 8.96 111626 36 9846 101376 8.85 111222 37 9981 100525 9.03 110506 38 9366 100251 8.54 109617 39 9348 99969 8.55 109317 40 9222 100862 8.38 110084 41 8864 99982 8.14 108846 42 8632 98584 8.05 107216 43 8338 97754 7.86 106092 44 7855 95656 7.59 103511 45 7701 95005 7.50 102706 46 7389 94572 7.25 101961 47 7110 93791 7.05 100901 48 6940 93297 6.92 100237 49 6567 92869 6.60 99436 50 6055 90399 6.28 96454 51 6037 88879 6.36 94916 52 5919 88854 6.25 94773 53 5616 86071 6.13 91687 54 5205 85438 5.74 90643 55 5125 84832 5.70 89957 56 4892 83724 5.52 88616 57 4446 83947 5.03 88393 58 4291 81702 4.99 85993 59 4190 81171 4.91 85361 60 3952 79457 4.74 83409 61 3688 77838 4.52 81526 62 3478 76787 4.33 80265 63 3334 76399 4.18 79733 64 3153 75976 3.98 79129 65 3020 73721 3.94 76741 66 3019 72400 4.00 75419 67 2804 72203 3.74 75007 68 2655 71883 3.56 74538 69 2492 70950 3.39 73442 70 2476 69030 3.46 71506 71 2514 67659 3.58 70173 72 2289 66997 3.30 69286 73 2236 65296 3.31 67532 74 2125 64080 3.21 66205 75 2207 62692 3.40 64899 76 2135 61543 3.35 63678 77 1951 59032 3.20 60983 78 1847 55112 3.24 56959 79 1515 45630 3.21 47145 80 685 20668 3.21 21353 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8760 5401 61.86 14161 2 9710 4631 67.71 14341 3 8639 4032 68.18 12671 4 6634 3931 62.79 10565 5 6499 3722 63.58 10221 6 6438 3557 64.41 9995 7 6890 3782 64.56 10672 8 6599 3336 66.42 9935 9 6742 3210 67.75 9952 10 6771 3232 67.69 10003 11 6651 3341 66.56 9992 12 6441 3282 66.24 9723 13 6401 3119 67.24 9520 14 6265 3080 67.04 9345 15 6272 2840 68.83 9112 16 6174 2885 68.15 9059 17 5984 2884 67.48 8868 18 6101 2620 69.96 8721 19 5636 2685 67.73 8321 20 5754 2610 68.79 8364 21 5550 2447 69.40 7997 22 5586 2416 69.81 8002 23 5356 2428 68.81 7784 24 5319 2383 69.06 7702 25 5202 2390 68.52 7592 26 5236 2372 68.82 7608 27 4955 2282 68.47 7237 28 5041 2194 69.68 7235 29 4940 2007 71.11 6947 30 4903 2037 70.65 6940 31 4964 1946 71.84 6910 32 4787 2018 70.35 6805 33 4645 1892 71.06 6537 34 4611 1826 71.63 6437 35 4482 1839 70.91 6321 36 4362 1832 70.42 6194 37 4313 1697 71.76 6010 38 4310 1719 71.49 6029 39 4260 1709 71.37 5969 40 4077 1633 71.40 5710 41 4046 1638 71.18 5684 42 3930 1553 71.68 5483 43 3836 1516 71.67 5352 44 3747 1458 71.99 5205 45 3565 1494 70.47 5059 46 3611 1409 71.93 5020 47 3619 1437 71.58 5056 48 3476 1409 71.16 4885 49 3377 1344 71.53 4721 50 3307 1306 71.69 4613 51 3313 1284 72.07 4597 52 3209 1271 71.63 4480 53 3120 1179 72.58 4299 54 2979 1172 71.77 4151 55 2951 1168 71.64 4119 56 2914 1161 71.51 4075 57 2852 1142 71.41 3994 58 2707 1121 70.72 3828 59 2738 1136 70.68 3874 60 2617 1080 70.79 3697 61 2603 1017 71.91 3620 62 2495 1090 69.60 3585 63 2417 971 71.34 3388 64 2400 989 70.82 3389 65 2187 981 69.03 3168 66 2273 920 71.19 3193 67 2189 882 71.28 3071 68 2158 889 70.82 3047 69 2117 883 70.57 3000 70 2069 827 71.44 2896 71 2016 776 72.21 2792 72 1993 861 69.83 2854 73 1847 797 69.86 2644 74 1828 775 70.23 2603 75 1705 777 68.69 2482 76 1799 750 70.58 2549 77 1558 724 68.27 2282 78 1481 629 70.19 2110 79 1279 588 68.51 1867 80 906 383 70.29 1289 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3600 21585 14.29 25185 2 1356 19443 6.52 20799 3 1595 18571 7.91 20166 4 746 18775 3.82 19521 5 870 16214 5.09 17084 6 1151 15766 6.80 16917 7 629 16222 3.73 16851 8 712 16924 4.04 17636 9 590 15249 3.72 15839 10 569 15384 3.57 15953 11 589 15422 3.68 16011 12 489 15811 3.00 16300 13 459 15273 2.92 15732 14 431 14538 2.88 14969 15 413 14910 2.70 15323 16 385 14402 2.60 14787 17 435 13931 3.03 14366 18 434 13744 3.06 14178 19 340 13461 2.46 13801 20 342 13013 2.56 13355 21 299 12937 2.26 13236 22 310 12474 2.42 12784 23 310 12697 2.38 13007 24 308 12499 2.40 12807 25 272 12163 2.19 12435 26 258 11886 2.12 12144 27 282 11973 2.30 12255 28 251 11537 2.13 11788 29 256 11626 2.15 11882 30 258 11093 2.27 11351 31 255 11034 2.26 11289 32 211 10858 1.91 11069 33 230 10543 2.13 10773 34 198 10338 1.88 10536 35 217 10197 2.08 10414 36 202 9927 1.99 10129 37 222 9761 2.22 9983 38 192 9572 1.97 9764 39 142 9409 1.49 9551 40 158 9450 1.64 9608 41 177 9141 1.90 9318 42 169 8857 1.87 9026 43 157 8880 1.74 9037 44 158 8441 1.84 8599 45 166 8432 1.93 8598 46 139 8236 1.66 8375 47 139 8127 1.68 8266 48 142 7852 1.78 7994 49 147 7666 1.88 7813 50 117 7513 1.53 7630 51 111 7334 1.49 7445 52 119 7190 1.63 7309 53 142 7112 1.96 7254 54 102 6844 1.47 6946 55 127 6668 1.87 6795 56 101 6522 1.52 6623 57 124 6506 1.87 6630 58 108 6347 1.67 6455 59 113 6202 1.79 6315 60 106 6120 1.70 6226 61 111 5705 1.91 5816 62 92 5787 1.56 5879 63 123 5714 2.11 5837 64 94 5455 1.69 5549 65 84 5388 1.54 5472 66 82 5256 1.54 5338 67 91 5026 1.78 5117 68 101 5046 1.96 5147 69 94 4849 1.90 4943 70 82 4599 1.75 4681 71 103 4634 2.17 4737 72 75 4528 1.63 4603 73 76 4473 1.67 4549 74 73 4290 1.67 4363 75 73 4144 1.73 4217 76 69 3891 1.74 3960 77 70 3908 1.76 3978 78 54 3546 1.50 3600 79 65 3064 2.08 3129 80 37 2028 1.79 2065 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9303 72182 11.42 81485 2 6488 60690 9.66 67178 3 4524 58699 7.16 63223 4 3431 56172 5.76 59603 5 3597 54674 6.17 58271 6 4513 49970 8.28 54483 7 2747 49706 5.24 52453 8 2975 48269 5.81 51244 9 3102 48675 5.99 51777 10 2829 48331 5.53 51160 11 2645 46541 5.38 49186 12 2359 46185 4.86 48544 13 2347 46736 4.78 49083 14 2112 46385 4.35 48497 15 2116 46146 4.38 48262 16 2027 45654 4.25 47681 17 1899 45043 4.05 46942 18 1773 44076 3.87 45849 19 1693 42697 3.81 44390 20 1570 41834 3.62 43404 21 1578 41065 3.70 42643 22 1476 39899 3.57 41375 23 1459 39444 3.57 40903 24 1397 38773 3.48 40170 25 1358 38470 3.41 39828 26 1256 37666 3.23 38922 27 1303 37137 3.39 38440 28 1200 36711 3.17 37911 29 1188 35977 3.20 37165 30 1083 35433 2.97 36516 31 1081 35496 2.96 36577 32 984 34400 2.78 35384 33 1017 33713 2.93 34730 34 945 33521 2.74 34466 35 894 32927 2.64 33821 36 909 32247 2.74 33156 37 924 31533 2.85 32457 38 865 31129 2.70 31994 39 815 30639 2.59 31454 40 738 30274 2.38 31012 41 779 29694 2.56 30473 42 639 28945 2.16 29584 43 713 28526 2.44 29239 44 610 27611 2.16 28221 45 686 26884 2.49 27570 46 625 26993 2.26 27618 47 688 26217 2.56 26905 48 617 25911 2.33 26528 49 630 25682 2.39 26312 50 585 24448 2.34 25033 51 533 23856 2.19 24389 52 536 23767 2.21 24303 53 550 22731 2.36 23281 54 530 22236 2.33 22766 55 571 22137 2.51 22708 56 545 21317 2.49 21862 57 590 20893 2.75 21483 58 498 20372 2.39 20870 59 514 20022 2.50 20536 60 448 19396 2.26 19844 61 496 19011 2.54 19507 62 430 18597 2.26 19027 63 477 18279 2.54 18756 64 399 18004 2.17 18403 65 416 17496 2.32 17912 66 395 16814 2.30 17209 67 389 16743 2.27 17132 68 376 16537 2.22 16913 69 355 16055 2.16 16410 70 363 15770 2.25 16133 71 356 15215 2.29 15571 72 322 15125 2.08 15447 73 307 14548 2.07 14855 74 280 13993 1.96 14273 75 296 13658 2.12 13954 76 298 13175 2.21 13473 77 265 12763 2.03 13028 78 280 11887 2.30 12167 79 253 10525 2.35 10778 80 166 7117 2.28 7283