CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12868 7363 63.61 20231 2 14476 6812 68.00 21288 3 13464 6562 67.23 20026 4 12754 6259 67.08 19013 5 12387 6235 66.52 18622 6 12386 6063 67.14 18449 7 13040 6281 67.49 19321 8 12666 6088 67.54 18754 9 12884 5776 69.05 18660 10 13360 5940 69.22 19300 11 13655 6256 68.58 19911 12 13391 6031 68.95 19422 13 13526 5922 69.55 19448 14 13582 5885 69.77 19467 15 13715 5810 70.24 19525 16 13745 5765 70.45 19510 17 13679 6036 69.38 19715 18 13907 5870 70.32 19777 19 13887 5833 70.42 19720 20 13747 5952 69.79 19699 21 14033 5978 70.13 20011 22 13946 5871 70.37 19817 23 13902 5826 70.47 19728 24 13851 5900 70.13 19751 25 14181 5894 70.64 20075 26 14084 6013 70.08 20097 27 14095 5677 71.29 19772 28 14179 5672 71.43 19851 29 14153 5836 70.80 19989 30 13917 5614 71.26 19531 31 14068 5905 70.44 19973 32 14115 5791 70.91 19906 33 13993 5682 71.12 19675 34 14155 5695 71.31 19850 35 14063 5646 71.35 19709 36 14150 5652 71.46 19802 37 13978 5527 71.66 19505 38 13967 5731 70.91 19698 39 14120 5524 71.88 19644 40 14338 5679 71.63 20017 41 13637 5604 70.87 19241 42 13786 5521 71.40 19307 43 13457 5375 71.46 18832 44 13514 5374 71.55 18888 45 13374 5414 71.18 18788 46 13437 5222 72.01 18659 47 13483 5503 71.02 18986 48 13057 5193 71.55 18250 49 13178 5326 71.22 18504 50 12712 5105 71.35 17817 51 12557 5206 70.69 17763 52 12604 5181 70.87 17785 53 12479 4998 71.40 17477 54 12212 4976 71.05 17188 55 12328 4876 71.66 17204 56 12178 5026 70.79 17204 57 12150 4889 71.31 17039 58 11477 4903 70.07 16380 59 11556 4824 70.55 16380 60 11320 4690 70.71 16010 61 11520 4615 71.40 16135 62 11137 4669 70.46 15806 63 10848 4512 70.62 15360 64 10732 4540 70.27 15272 65 10671 4487 70.40 15158 66 10550 4399 70.57 14949 67 10237 4458 69.66 14695 68 10104 4205 70.61 14309 69 10174 4215 70.71 14389 70 10006 4215 70.36 14221 71 9860 4098 70.64 13958 72 9743 4167 70.04 13910 73 9392 3988 70.19 13380 74 9217 4027 69.59 13244 75 8951 3893 69.69 12844 76 8910 3853 69.81 12763 77 8285 3735 68.93 12020 78 7675 3590 68.13 11265 79 6298 2890 68.55 9188 80 3019 1437 67.75 4456 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4169 29477 12.39 33646 2 2645 30847 7.90 33492 3 2176 30338 6.69 32514 4 1532 29686 4.91 31218 5 1542 28975 5.05 30517 6 1716 29310 5.53 31026 7 1314 29121 4.32 30435 8 1314 30340 4.15 31654 9 1333 29316 4.35 30649 10 1233 29076 4.07 30309 11 1245 29845 4.00 31090 12 1173 30247 3.73 31420 13 1140 29625 3.71 30765 14 1160 30109 3.71 31269 15 1234 30350 3.91 31584 16 1124 30159 3.59 31283 17 1124 30297 3.58 31421 18 1184 31220 3.65 32404 19 1089 30637 3.43 31726 20 1126 30935 3.51 32061 21 1093 31193 3.39 32286 22 1162 30682 3.65 31844 23 1036 30999 3.23 32035 24 1026 31660 3.14 32686 25 1054 31144 3.27 32198 26 1123 30835 3.51 31958 27 1074 31727 3.27 32801 28 1057 31431 3.25 32488 29 1011 31720 3.09 32731 30 1041 31135 3.24 32176 31 990 31895 3.01 32885 32 985 31807 3.00 32792 33 1068 32023 3.23 33091 34 1036 31055 3.23 32091 35 986 31343 3.05 32329 36 977 31255 3.03 32232 37 936 30798 2.95 31734 38 950 30698 3.00 31648 39 923 31249 2.87 32172 40 906 30742 2.86 31648 41 973 30695 3.07 31668 42 881 30806 2.78 31687 43 862 30698 2.73 31560 44 830 29941 2.70 30771 45 807 30182 2.60 30989 46 852 29565 2.80 30417 47 767 29476 2.54 30243 48 773 29129 2.59 29902 49 748 28829 2.53 29577 50 759 28577 2.59 29336 51 757 28675 2.57 29432 52 661 27930 2.31 28591 53 681 27724 2.40 28405 54 671 27757 2.36 28428 55 699 27100 2.51 27799 56 670 26834 2.44 27504 57 668 27459 2.37 28127 58 637 26214 2.37 26851 59 708 25907 2.66 26615 60 584 26344 2.17 26928 61 605 25454 2.32 26059 62 634 24925 2.48 25559 63 577 24949 2.26 25526 64 534 24101 2.17 24635 65 528 24310 2.13 24838 66 528 23989 2.15 24517 67 490 23505 2.04 23995 68 505 23060 2.14 23565 69 494 22786 2.12 23280 70 452 22453 1.97 22905 71 479 22039 2.13 22518 72 440 21669 1.99 22109 73 484 21500 2.20 21984 74 473 21029 2.20 21502 75 480 20969 2.24 21449 76 472 20216 2.28 20688 77 447 19444 2.25 19891 78 464 18332 2.47 18796 79 350 14666 2.33 15016 80 153 7032 2.13 7185 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16437 99111 14.23 115548 2 14802 100173 12.87 114975 3 14510 101110 12.55 115620 4 13622 100316 11.96 113938 5 13269 98599 11.86 111868 6 13276 94841 12.28 108117 7 12634 94918 11.75 107552 8 12151 94267 11.42 106418 9 12764 95446 11.80 108210 10 12838 96983 11.69 109821 11 12379 95408 11.48 107787 12 12755 95912 11.74 108667 13 12708 97725 11.51 110433 14 12332 98560 11.12 110892 15 13269 100048 11.71 113317 16 13030 100389 11.49 113419 17 12418 101264 10.92 113682 18 12410 101733 10.87 114143 19 12762 103440 10.98 116202 20 12231 103149 10.60 115380 21 12932 102500 11.20 115432 22 12612 102213 10.98 114825 23 11938 102305 10.45 114243 24 12409 101991 10.85 114400 25 12152 102568 10.59 114720 26 11732 102429 10.28 114161 27 11944 102946 10.40 114890 28 11762 103424 10.21 115186 29 11365 102685 9.96 114050 30 11695 102680 10.23 114375 31 11176 104295 9.68 115471 32 10583 102525 9.36 113108 33 10707 101550 9.54 112257 34 10674 101331 9.53 112005 35 9928 101758 8.89 111686 36 10000 101593 8.96 111593 37 9980 101035 8.99 111015 38 9486 100627 8.61 110113 39 9601 100486 8.72 110087 40 9360 99925 8.56 109285 41 8767 99323 8.11 108090 42 8693 98153 8.14 106846 43 8326 97280 7.88 105606 44 7844 96219 7.54 104063 45 7677 94700 7.50 102377 46 7575 95054 7.38 102629 47 7094 93875 7.03 100969 48 6809 93851 6.76 100660 49 6632 92480 6.69 99112 50 6272 90711 6.47 96983 51 6181 89132 6.48 95313 52 5923 89353 6.22 95276 53 5747 86731 6.21 92478 54 5334 85304 5.88 90638 55 5221 84970 5.79 90191 56 4771 83867 5.38 88638 57 4567 83536 5.18 88103 58 4370 81514 5.09 85884 59 4235 80816 4.98 85051 60 3846 79316 4.62 83162 61 3785 78133 4.62 81918 62 3557 76833 4.42 80390 63 3251 76445 4.08 79696 64 3227 75760 4.09 78987 65 3015 74383 3.90 77398 66 2907 72813 3.84 75720 67 2808 72140 3.75 74948 68 2639 71573 3.56 74212 69 2568 70607 3.51 73175 70 2518 68467 3.55 70985 71 2523 68066 3.57 70589 72 2362 67133 3.40 69495 73 2293 65183 3.40 67476 74 2153 64357 3.24 66510 75 2238 62793 3.44 65031 76 2167 61286 3.42 63453 77 1892 59300 3.09 61192 78 1881 54875 3.31 56756 79 1536 45574 3.26 47110 80 640 20756 2.99 21396 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8980 5345 62.69 14325 2 9515 4381 68.47 13896 3 8730 4162 67.72 12892 4 6866 3950 63.48 10816 5 6608 3771 63.67 10379 6 6604 3446 65.71 10050 7 6772 3677 64.81 10449 8 6712 3361 66.63 10073 9 6646 3244 67.20 9890 10 6707 3289 67.10 9996 11 6745 3342 66.87 10087 12 6570 3193 67.29 9763 13 6406 3079 67.54 9485 14 6383 3138 67.04 9521 15 6487 2873 69.31 9360 16 6300 2789 69.31 9089 17 5990 2771 68.37 8761 18 5818 2698 68.32 8516 19 5791 2515 69.72 8306 20 5788 2553 69.39 8341 21 5355 2584 67.45 7939 22 5630 2473 69.48 8103 23 5377 2376 69.35 7753 24 5426 2368 69.62 7794 25 5398 2437 68.90 7835 26 5248 2216 70.31 7464 27 5103 2141 70.44 7244 28 5022 2160 69.92 7182 29 4918 2161 69.47 7079 30 4882 2058 70.35 6940 31 4946 2017 71.03 6963 32 4736 2012 70.18 6748 33 4629 1920 70.68 6549 34 4610 1943 70.35 6553 35 4505 1872 70.64 6377 36 4476 1816 71.14 6292 37 4380 1734 71.64 6114 38 4257 1719 71.23 5976 39 4245 1771 70.56 6016 40 4182 1714 70.93 5896 41 4054 1588 71.85 5642 42 3809 1553 71.04 5362 43 3833 1542 71.31 5375 44 3801 1493 71.80 5294 45 3610 1448 71.37 5058 46 3524 1413 71.38 4937 47 3481 1452 70.57 4933 48 3423 1343 71.82 4766 49 3333 1305 71.86 4638 50 3323 1259 72.52 4582 51 3100 1255 71.18 4355 52 3158 1307 70.73 4465 53 2974 1162 71.91 4136 54 3060 1230 71.33 4290 55 2938 1145 71.96 4083 56 2995 1150 72.26 4145 57 2772 1193 69.91 3965 58 2739 1082 71.68 3821 59 2725 1084 71.54 3809 60 2645 1074 71.12 3719 61 2543 1018 71.41 3561 62 2483 1030 70.68 3513 63 2332 929 71.51 3261 64 2376 954 71.35 3330 65 2256 1011 69.05 3267 66 2203 959 69.67 3162 67 2163 914 70.30 3077 68 2147 941 69.53 3088 69 2051 906 69.36 2957 70 2074 812 71.86 2886 71 1947 840 69.86 2787 72 1914 834 69.65 2748 73 1794 731 71.05 2525 74 1869 727 72.00 2596 75 1784 762 70.07 2546 76 1750 730 70.56 2480 77 1656 698 70.35 2354 78 1495 678 68.80 2173 79 1233 590 67.64 1823 80 811 396 67.19 1207 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3674 21380 14.66 25054 2 1470 19363 7.06 20833 3 1571 18710 7.75 20281 4 700 18856 3.58 19556 5 806 16334 4.70 17140 6 1127 15987 6.59 17114 7 622 16370 3.66 16992 8 713 17266 3.97 17979 9 589 15450 3.67 16039 10 590 15169 3.74 15759 11 542 15386 3.40 15928 12 533 15561 3.31 16094 13 417 15247 2.66 15664 14 449 14770 2.95 15219 15 430 14799 2.82 15229 16 385 14317 2.62 14702 17 398 14186 2.73 14584 18 424 13662 3.01 14086 19 321 13289 2.36 13610 20 318 13132 2.36 13450 21 325 12966 2.45 13291 22 303 12643 2.34 12946 23 320 12690 2.46 13010 24 257 12253 2.05 12510 25 307 11958 2.50 12265 26 290 11946 2.37 12236 27 267 11839 2.21 12106 28 276 11632 2.32 11908 29 236 11616 1.99 11852 30 230 11260 2.00 11490 31 267 11115 2.35 11382 32 234 11037 2.08 11271 33 245 10788 2.22 11033 34 188 10241 1.80 10429 35 219 10291 2.08 10510 36 191 10083 1.86 10274 37 172 9707 1.74 9879 38 193 9574 1.98 9767 39 179 9706 1.81 9885 40 160 9399 1.67 9559 41 166 9155 1.78 9321 42 149 9066 1.62 9215 43 165 8800 1.84 8965 44 161 8512 1.86 8673 45 147 8406 1.72 8553 46 126 8225 1.51 8351 47 146 8006 1.79 8152 48 129 7819 1.62 7948 49 133 7624 1.71 7757 50 134 7447 1.77 7581 51 157 7336 2.10 7493 52 117 7147 1.61 7264 53 123 6998 1.73 7121 54 122 7001 1.71 7123 55 115 6795 1.66 6910 56 98 6449 1.50 6547 57 119 6485 1.80 6604 58 104 6325 1.62 6429 59 103 6085 1.66 6188 60 87 6104 1.41 6191 61 111 5689 1.91 5800 62 96 5668 1.67 5764 63 103 5636 1.79 5739 64 100 5422 1.81 5522 65 82 5394 1.50 5476 66 104 5227 1.95 5331 67 82 5159 1.56 5241 68 94 4852 1.90 4946 69 95 4797 1.94 4892 70 81 4781 1.67 4862 71 63 4609 1.35 4672 72 59 4539 1.28 4598 73 80 4521 1.74 4601 74 73 4289 1.67 4362 75 72 4087 1.73 4159 76 67 3987 1.65 4054 77 75 3885 1.89 3960 78 81 3532 2.24 3613 79 54 3085 1.72 3139 80 44 2075 2.08 2119 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9476 71709 11.67 81185 2 6720 60490 10.00 67210 3 4545 58372 7.22 62917 4 3424 56295 5.73 59719 5 3572 53861 6.22 57433 6 4498 49807 8.28 54305 7 2842 49651 5.41 52493 8 2920 48322 5.70 51242 9 3028 48552 5.87 51580 10 2860 48276 5.59 51136 11 2515 46618 5.12 49133 12 2459 46519 5.02 48978 13 2266 46512 4.65 48778 14 2157 46218 4.46 48375 15 2225 46056 4.61 48281 16 2147 45834 4.47 47981 17 1896 44760 4.06 46656 18 1777 44121 3.87 45898 19 1711 42816 3.84 44527 20 1468 42038 3.37 43506 21 1636 41645 3.78 43281 22 1498 40313 3.58 41811 23 1404 39790 3.41 41194 24 1436 39275 3.53 40711 25 1256 38385 3.17 39641 26 1213 37728 3.11 38941 27 1263 37388 3.27 38651 28 1165 36780 3.07 37945 29 1108 35751 3.01 36859 30 1063 35462 2.91 36525 31 1053 35559 2.88 36612 32 1009 34608 2.83 35617 33 982 33937 2.81 34919 34 913 33416 2.66 34329 35 845 32867 2.51 33712 36 847 32370 2.55 33217 37 858 31820 2.63 32678 38 797 30980 2.51 31777 39 844 30526 2.69 31370 40 795 29927 2.59 30722 41 737 29579 2.43 30316 42 697 28848 2.36 29545 43 700 28116 2.43 28816 44 654 27658 2.31 28312 45 661 26968 2.39 27629 46 599 26801 2.19 27400 47 620 26047 2.32 26667 48 639 25796 2.42 26435 49 627 25784 2.37 26411 50 572 24368 2.29 24940 51 533 23646 2.20 24179 52 552 23601 2.29 24153 53 533 22653 2.30 23186 54 487 22011 2.16 22498 55 494 21666 2.23 22160 56 504 21310 2.31 21814 57 500 20873 2.34 21373 58 480 20170 2.32 20650 59 456 20226 2.20 20682 60 446 19420 2.25 19866 61 465 18681 2.43 19146 62 402 18671 2.11 19073 63 431 18389 2.29 18820 64 414 18106 2.24 18520 65 411 17290 2.32 17701 66 390 16933 2.25 17323 67 356 16451 2.12 16807 68 382 16478 2.27 16860 69 363 16205 2.19 16568 70 394 15586 2.47 15980 71 402 15272 2.56 15674 72 343 15312 2.19 15655 73 344 14508 2.32 14852 74 349 14234 2.39 14583 75 339 13616 2.43 13955 76 329 13300 2.41 13629 77 309 12834 2.35 13143 78 281 11696 2.35 11977 79 235 10501 2.19 10736 80 152 7118 2.09 7270