CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12896 7551 63.07 20447 2 14529 6781 68.18 21310 3 13608 6612 67.30 20220 4 12518 6223 66.79 18741 5 12367 6191 66.64 18558 6 12421 5931 67.68 18352 7 13215 6298 67.72 19513 8 12883 6030 68.12 18913 9 12861 5817 68.86 18678 10 13462 5975 69.26 19437 11 13557 6223 68.54 19780 12 13640 6229 68.65 19869 13 13529 5931 69.52 19460 14 13540 5932 69.54 19472 15 14014 5817 70.67 19831 16 13605 5996 69.41 19601 17 13764 5984 69.70 19748 18 13777 5746 70.57 19523 19 13906 5755 70.73 19661 20 13893 5749 70.73 19642 21 14021 5897 70.39 19918 22 14164 5887 70.64 20051 23 13798 5770 70.51 19568 24 14093 5627 71.47 19720 25 14065 5746 71.00 19811 26 14121 5901 70.53 20022 27 13906 5790 70.60 19696 28 14264 5859 70.88 20123 29 14127 5843 70.74 19970 30 14041 5673 71.22 19714 31 14202 5680 71.43 19882 32 14274 5712 71.42 19986 33 14207 5725 71.28 19932 34 14328 5560 72.04 19888 35 14200 5555 71.88 19755 36 14070 5586 71.58 19656 37 14255 5536 72.03 19791 38 13862 5582 71.29 19444 39 14068 5481 71.96 19549 40 14131 5588 71.66 19719 41 14110 5678 71.31 19788 42 13566 5397 71.54 18963 43 13627 5388 71.66 19015 44 13735 5416 71.72 19151 45 13553 5356 71.67 18909 46 13522 5355 71.63 18877 47 13380 5355 71.42 18735 48 13135 5222 71.55 18357 49 13075 5212 71.50 18287 50 12976 5225 71.29 18201 51 12529 5221 70.59 17750 52 12499 5000 71.43 17499 53 12525 4958 71.64 17483 54 12189 4991 70.95 17180 55 12237 4931 71.28 17168 56 12085 4956 70.92 17041 57 12096 4921 71.08 17017 58 11900 4869 70.96 16769 59 11403 4801 70.37 16204 60 11449 4688 70.95 16137 61 11287 4608 71.01 15895 62 11212 4646 70.70 15858 63 11045 4571 70.73 15616 64 10913 4566 70.50 15479 65 10645 4467 70.44 15112 66 10358 4438 70.01 14796 67 10212 4403 69.87 14615 68 10130 4272 70.34 14402 69 9899 4236 70.03 14135 70 9980 4130 70.73 14110 71 9610 4127 69.96 13737 72 9432 3960 70.43 13392 73 9522 4096 69.92 13618 74 9260 4019 69.73 13279 75 8962 3938 69.47 12900 76 8804 3871 69.46 12675 77 8337 3738 69.04 12075 78 7768 3551 68.63 11319 79 6349 2864 68.91 9213 80 3056 1443 67.93 4499 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4114 29655 12.18 33769 2 2633 31023 7.82 33656 3 2215 30406 6.79 32621 4 1591 30018 5.03 31609 5 1597 28887 5.24 30484 6 1675 29069 5.45 30744 7 1424 29484 4.61 30908 8 1387 30317 4.37 31704 9 1277 29288 4.18 30565 10 1144 29247 3.76 30391 11 1254 29696 4.05 30950 12 1192 30253 3.79 31445 13 1233 29642 3.99 30875 14 1217 30414 3.85 31631 15 1233 30576 3.88 31809 16 1081 30214 3.45 31295 17 1056 30178 3.38 31234 18 1193 30817 3.73 32010 19 1119 30429 3.55 31548 20 1044 30680 3.29 31724 21 1093 31182 3.39 32275 22 1088 30725 3.42 31813 23 1024 31326 3.17 32350 24 1019 31722 3.11 32741 25 1025 31059 3.19 32084 26 1066 31274 3.30 32340 27 1049 31846 3.19 32895 28 1011 31248 3.13 32259 29 1019 31929 3.09 32948 30 976 31457 3.01 32433 31 1032 31557 3.17 32589 32 978 31741 2.99 32719 33 1086 31979 3.28 33065 34 990 31356 3.06 32346 35 1041 31005 3.25 32046 36 956 31279 2.97 32235 37 976 30937 3.06 31913 38 899 30939 2.82 31838 39 885 31093 2.77 31978 40 900 31016 2.82 31916 41 855 30716 2.71 31571 42 888 30757 2.81 31645 43 898 30228 2.89 31126 44 858 29603 2.82 30461 45 852 30283 2.74 31135 46 798 29440 2.64 30238 47 795 29688 2.61 30483 48 834 29021 2.79 29855 49 768 28693 2.61 29461 50 803 28470 2.74 29273 51 790 28272 2.72 29062 52 740 27910 2.58 28650 53 692 27564 2.45 28256 54 653 27719 2.30 28372 55 720 27514 2.55 28234 56 702 27055 2.53 27757 57 638 27277 2.29 27915 58 641 26221 2.39 26862 59 670 25981 2.51 26651 60 596 26285 2.22 26881 61 563 25033 2.20 25596 62 649 24666 2.56 25315 63 568 25004 2.22 25572 64 506 24382 2.03 24888 65 511 23896 2.09 24407 66 530 24082 2.15 24612 67 505 23422 2.11 23927 68 462 22862 1.98 23324 69 476 22695 2.05 23171 70 389 22300 1.71 22689 71 475 21996 2.11 22471 72 463 21712 2.09 22175 73 457 21381 2.09 21838 74 488 21259 2.24 21747 75 498 20949 2.32 21447 76 456 19951 2.23 20407 77 449 19464 2.25 19913 78 403 17942 2.20 18345 79 364 14913 2.38 15277 80 148 7059 2.05 7207 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16009 98948 13.93 114957 2 14749 100471 12.80 115220 3 14727 101777 12.64 116504 4 13475 101134 11.76 114609 5 12945 98692 11.60 111637 6 13327 94722 12.33 108049 7 12645 94896 11.76 107541 8 12043 94055 11.35 106098 9 12754 95137 11.82 107891 10 12652 96936 11.55 109588 11 12334 95945 11.39 108279 12 12617 96545 11.56 109162 13 12597 97458 11.45 110055 14 12191 98383 11.03 110574 15 12803 99162 11.43 111965 16 12999 101339 11.37 114338 17 12203 101754 10.71 113957 18 12681 102011 11.06 114692 19 12647 102988 10.94 115635 20 12187 103010 10.58 115197 21 12636 103293 10.90 115929 22 12482 102403 10.86 114885 23 11741 102784 10.25 114525 24 12066 102333 10.55 114399 25 11984 102593 10.46 114577 26 11793 101265 10.43 113058 27 11802 103022 10.28 114824 28 11853 102532 10.36 114385 29 11456 102813 10.03 114269 30 11556 101986 10.18 113542 31 11006 104871 9.50 115877 32 10366 102491 9.19 112857 33 10589 101493 9.45 112082 34 10689 102225 9.47 112914 35 9818 101877 8.79 111695 36 9862 101646 8.84 111508 37 10094 101774 9.02 111868 38 9485 100054 8.66 109539 39 9380 100331 8.55 109711 40 9237 100058 8.45 109295 41 8924 99459 8.23 108383 42 8465 98577 7.91 107042 43 8463 97458 7.99 105921 44 7922 95945 7.63 103867 45 7693 95114 7.48 102807 46 7316 94651 7.17 101967 47 7240 93275 7.20 100515 48 7022 93846 6.96 100868 49 6682 93223 6.69 99905 50 6193 90409 6.41 96602 51 6135 88873 6.46 95008 52 5981 89456 6.27 95437 53 5525 86906 5.98 92431 54 5348 85794 5.87 91142 55 5254 84704 5.84 89958 56 4706 83443 5.34 88149 57 4504 83479 5.12 87983 58 4338 81677 5.04 86015 59 4158 80788 4.89 84946 60 3822 79900 4.57 83722 61 3694 77876 4.53 81570 62 3509 77138 4.35 80647 63 3271 76382 4.11 79653 64 3140 76211 3.96 79351 65 2990 73842 3.89 76832 66 2871 72288 3.82 75159 67 2790 71973 3.73 74763 68 2674 71922 3.58 74596 69 2550 70466 3.49 73016 70 2521 68943 3.53 71464 71 2500 67387 3.58 69887 72 2286 66972 3.30 69258 73 2245 65388 3.32 67633 74 2260 63970 3.41 66230 75 2153 62684 3.32 64837 76 2102 61648 3.30 63750 77 1952 59322 3.19 61274 78 1789 55829 3.10 57618 79 1510 45005 3.25 46515 80 669 20840 3.11 21509 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8907 5438 62.09 14345 2 9721 4334 69.16 14055 3 8749 4319 66.95 13068 4 6821 3850 63.92 10671 5 6668 3696 64.34 10364 6 6692 3459 65.92 10151 7 6950 3806 64.62 10756 8 6870 3348 67.23 10218 9 6733 3236 67.54 9969 10 6761 3342 66.92 10103 11 6684 3305 66.91 9989 12 6454 3135 67.31 9589 13 6435 3068 67.72 9503 14 6460 3007 68.24 9467 15 6421 3014 68.06 9435 16 6339 2858 68.92 9197 17 6224 2776 69.16 9000 18 5863 2709 68.40 8572 19 5724 2563 69.07 8287 20 5761 2573 69.13 8334 21 5585 2491 69.16 8076 22 5550 2410 69.72 7960 23 5313 2481 68.17 7794 24 5318 2386 69.03 7704 25 5274 2306 69.58 7580 26 5178 2317 69.09 7495 27 5022 2221 69.34 7243 28 5053 2237 69.31 7290 29 4947 2112 70.08 7059 30 4715 2079 69.40 6794 31 4818 1995 70.72 6813 32 4753 2042 69.95 6795 33 4510 1914 70.21 6424 34 4666 1946 70.57 6612 35 4500 1840 70.98 6340 36 4321 1867 69.83 6188 37 4342 1759 71.17 6101 38 4251 1742 70.93 5993 39 4304 1651 72.28 5955 40 4230 1686 71.50 5916 41 4032 1580 71.85 5612 42 3916 1545 71.71 5461 43 3886 1471 72.54 5357 44 3802 1529 71.32 5331 45 3710 1463 71.72 5173 46 3587 1468 70.96 5055 47 3541 1443 71.05 4984 48 3499 1369 71.88 4868 49 3465 1388 71.40 4853 50 3291 1343 71.02 4634 51 3118 1259 71.24 4377 52 3158 1209 72.32 4367 53 3070 1184 72.17 4254 54 3007 1226 71.04 4233 55 2987 1237 70.71 4224 56 3043 1230 71.21 4273 57 2757 1132 70.89 3889 58 2688 1121 70.57 3809 59 2688 1086 71.22 3774 60 2725 1078 71.65 3803 61 2685 1022 72.43 3707 62 2509 1009 71.32 3518 63 2409 1043 69.79 3452 64 2428 944 72.00 3372 65 2291 996 69.70 3287 66 2314 943 71.05 3257 67 2257 922 71.00 3179 68 2234 921 70.81 3155 69 2105 878 70.57 2983 70 2116 888 70.44 3004 71 2012 876 69.67 2888 72 1961 812 70.72 2773 73 1963 788 71.36 2751 74 1845 758 70.88 2603 75 1874 744 71.58 2618 76 1673 756 68.88 2429 77 1684 683 71.14 2367 78 1470 674 68.56 2144 79 1307 571 69.60 1878 80 902 391 69.76 1293 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3550 21613 14.11 25163 2 1479 19486 7.05 20965 3 1412 18517 7.09 19929 4 742 18476 3.86 19218 5 863 16102 5.09 16965 6 1131 16295 6.49 17426 7 647 16298 3.82 16945 8 703 17152 3.94 17855 9 624 15469 3.88 16093 10 580 15351 3.64 15931 11 589 15192 3.73 15781 12 540 15627 3.34 16167 13 487 15163 3.11 15650 14 476 14547 3.17 15023 15 462 14819 3.02 15281 16 436 14352 2.95 14788 17 415 13857 2.91 14272 18 411 13817 2.89 14228 19 365 13412 2.65 13777 20 339 13058 2.53 13397 21 346 12895 2.61 13241 22 313 12598 2.42 12911 23 299 12782 2.29 13081 24 293 12285 2.33 12578 25 284 12093 2.29 12377 26 305 11689 2.54 11994 27 246 11951 2.02 12197 28 273 11511 2.32 11784 29 260 11357 2.24 11617 30 216 11227 1.89 11443 31 223 11006 1.99 11229 32 231 10776 2.10 11007 33 264 10675 2.41 10939 34 228 10244 2.18 10472 35 201 10173 1.94 10374 36 191 10111 1.85 10302 37 218 9747 2.19 9965 38 199 9612 2.03 9811 39 176 9397 1.84 9573 40 153 9248 1.63 9401 41 154 9150 1.66 9304 42 142 8971 1.56 9113 43 140 8771 1.57 8911 44 138 8405 1.62 8543 45 133 8294 1.58 8427 46 169 8339 1.99 8508 47 121 7995 1.49 8116 48 141 7889 1.76 8030 49 132 7763 1.67 7895 50 130 7508 1.70 7638 51 127 7310 1.71 7437 52 114 7128 1.57 7242 53 106 6910 1.51 7016 54 118 6896 1.68 7014 55 110 6841 1.58 6951 56 105 6541 1.58 6646 57 140 6484 2.11 6624 58 129 6205 2.04 6334 59 96 6135 1.54 6231 60 106 6173 1.69 6279 61 113 5674 1.95 5787 62 85 5927 1.41 6012 63 114 5684 1.97 5798 64 108 5348 1.98 5456 65 94 5294 1.74 5388 66 90 5215 1.70 5305 67 94 5124 1.80 5218 68 101 4820 2.05 4921 69 88 4804 1.80 4892 70 92 4700 1.92 4792 71 105 4661 2.20 4766 72 92 4412 2.04 4504 73 83 4409 1.85 4492 74 75 4283 1.72 4358 75 74 4242 1.71 4316 76 79 4118 1.88 4197 77 68 3835 1.74 3903 78 68 3614 1.85 3682 79 62 3109 1.96 3171 80 34 2110 1.59 2144 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9454 71984 11.61 81438 2 6562 61071 9.70 67633 3 4551 58722 7.19 63273 4 3407 56086 5.73 59493 5 3666 54047 6.35 57713 6 4411 49760 8.14 54171 7 2787 49675 5.31 52462 8 2958 48171 5.79 51129 9 3066 48623 5.93 51689 10 2871 47976 5.65 50847 11 2605 46427 5.31 49032 12 2471 46133 5.08 48604 13 2370 46556 4.84 48926 14 2176 46185 4.50 48361 15 2184 46168 4.52 48352 16 2055 45446 4.33 47501 17 1864 44601 4.01 46465 18 1884 43804 4.12 45688 19 1632 42953 3.66 44585 20 1636 41586 3.79 43222 21 1604 41087 3.76 42691 22 1433 40063 3.45 41496 23 1401 39901 3.39 41302 24 1456 38885 3.61 40341 25 1374 38423 3.45 39797 26 1376 37620 3.53 38996 27 1300 37251 3.37 38551 28 1219 36959 3.19 38178 29 1106 35958 2.98 37064 30 1117 35173 3.08 36290 31 1055 35676 2.87 36731 32 947 34665 2.66 35612 33 1016 33549 2.94 34565 34 961 33303 2.80 34264 35 898 32949 2.65 33847 36 867 32240 2.62 33107 37 869 31863 2.65 32732 38 805 30929 2.54 31734 39 804 30588 2.56 31392 40 747 30284 2.41 31031 41 753 29728 2.47 30481 42 698 29051 2.35 29749 43 664 28331 2.29 28995 44 699 27512 2.48 28211 45 655 26873 2.38 27528 46 654 26736 2.39 27390 47 640 25916 2.41 26556 48 621 25926 2.34 26547 49 642 25400 2.47 26042 50 603 24096 2.44 24699 51 545 23809 2.24 24354 52 566 23907 2.31 24473 53 536 22470 2.33 23006 54 509 22037 2.26 22546 55 521 21454 2.37 21975 56 485 21219 2.23 21704 57 544 21205 2.50 21749 58 509 20269 2.45 20778 59 502 20294 2.41 20796 60 470 19439 2.36 19909 61 481 18744 2.50 19225 62 408 18824 2.12 19232 63 444 18323 2.37 18767 64 441 18324 2.35 18765 65 373 17800 2.05 18173 66 415 17069 2.37 17484 67 406 16877 2.35 17283 68 395 16754 2.30 17149 69 390 16263 2.34 16653 70 372 15738 2.31 16110 71 384 15247 2.46 15631 72 327 15219 2.10 15546 73 353 14456 2.38 14809 74 321 14095 2.23 14416 75 310 13770 2.20 14080 76 341 13447 2.47 13788 77 316 12616 2.44 12932 78 273 11917 2.24 12190 79 233 10646 2.14 10879 80 158 7183 2.15 7341