CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 12859 7400 63.47 20259 2 14713 7009 67.73 21722 3 13753 6683 67.30 20436 4 12389 6342 66.14 18731 5 12238 6176 66.46 18414 6 12276 6134 66.68 18410 7 13087 6128 68.11 19215 8 12824 5872 68.59 18696 9 12883 5789 69.00 18672 10 13398 5969 69.18 19367 11 13494 6193 68.54 19687 12 13435 5994 69.15 19429 13 13565 5993 69.36 19558 14 13560 5968 69.44 19528 15 13951 5893 70.30 19844 16 13705 5948 69.73 19653 17 13778 5883 70.08 19661 18 13619 5713 70.45 19332 19 14000 5911 70.31 19911 20 13835 5805 70.44 19640 21 13861 5922 70.07 19783 22 14134 5951 70.37 20085 23 13834 5838 70.32 19672 24 13950 5744 70.83 19694 25 14277 5867 70.87 20144 26 14143 5954 70.37 20097 27 14095 5631 71.45 19726 28 14015 5724 71.00 19739 29 14106 5870 70.61 19976 30 13970 5786 70.71 19756 31 14556 5653 72.03 20209 32 14104 5707 71.19 19811 33 14253 5639 71.65 19892 34 14413 5703 71.65 20116 35 14143 5587 71.68 19730 36 14277 5572 71.93 19849 37 14165 5650 71.49 19815 38 13992 5563 71.55 19555 39 13922 5541 71.53 19463 40 14505 5589 72.19 20094 41 13722 5490 71.42 19212 42 13590 5440 71.41 19030 43 13649 5400 71.65 19049 44 13731 5481 71.47 19212 45 13428 5241 71.93 18669 46 13348 5379 71.28 18727 47 13526 5327 71.74 18853 48 13383 5308 71.60 18691 49 13121 5237 71.47 18358 50 12556 5148 70.92 17704 51 12484 5117 70.93 17601 52 12665 5003 71.68 17668 53 12541 5064 71.24 17605 54 12120 4955 70.98 17075 55 12242 4901 71.41 17143 56 11960 4839 71.19 16799 57 12115 4799 71.63 16914 58 11745 4799 70.99 16544 59 11558 4818 70.58 16376 60 11308 4544 71.33 15852 61 11349 4613 71.10 15962 62 11087 4619 70.59 15706 63 10839 4584 70.28 15423 64 10741 4458 70.67 15199 65 10575 4505 70.13 15080 66 10525 4254 71.22 14779 67 10275 4356 70.23 14631 68 10293 4274 70.66 14567 69 9946 4259 70.02 14205 70 9874 4136 70.48 14010 71 9675 4144 70.01 13819 72 9503 4029 70.23 13532 73 9502 3981 70.47 13483 74 9068 4085 68.94 13153 75 8802 3914 69.22 12716 76 8626 3760 69.64 12386 77 8458 3792 69.04 12250 78 7577 3582 67.90 11159 79 6239 2870 68.49 9109 80 3003 1340 69.15 4343 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4098 29616 12.16 33714 2 2653 30692 7.96 33345 3 2210 30427 6.77 32637 4 1517 30274 4.77 31791 5 1508 29073 4.93 30581 6 1713 28978 5.58 30691 7 1388 29244 4.53 30632 8 1315 30382 4.15 31697 9 1262 29668 4.08 30930 10 1328 29441 4.32 30769 11 1238 29680 4.00 30918 12 1176 30139 3.76 31315 13 1204 29695 3.90 30899 14 1148 29900 3.70 31048 15 1145 30814 3.58 31959 16 1092 30405 3.47 31497 17 1114 29931 3.59 31045 18 1117 30894 3.49 32011 19 1097 30477 3.47 31574 20 1085 30752 3.41 31837 21 1077 31239 3.33 32316 22 1034 30936 3.23 31970 23 1048 31155 3.25 32203 24 997 31199 3.10 32196 25 1052 31302 3.25 32354 26 1093 31051 3.40 32144 27 975 31853 2.97 32828 28 1064 31404 3.28 32468 29 1032 31931 3.13 32963 30 977 31344 3.02 32321 31 1016 31586 3.12 32602 32 1070 31668 3.27 32738 33 1104 31811 3.35 32915 34 932 30914 2.93 31846 35 1037 31462 3.19 32499 36 911 31325 2.83 32236 37 934 30715 2.95 31649 38 962 31091 3.00 32053 39 906 31331 2.81 32237 40 976 30851 3.07 31827 41 921 30512 2.93 31433 42 923 30816 2.91 31739 43 783 30008 2.54 30791 44 836 29693 2.74 30529 45 816 30111 2.64 30927 46 820 29559 2.70 30379 47 807 29287 2.68 30094 48 815 29279 2.71 30094 49 786 28856 2.65 29642 50 765 28564 2.61 29329 51 786 28404 2.69 29190 52 752 27757 2.64 28509 53 670 27739 2.36 28409 54 646 27697 2.28 28343 55 605 27124 2.18 27729 56 660 26868 2.40 27528 57 604 26988 2.19 27592 58 604 26564 2.22 27168 59 664 26009 2.49 26673 60 566 25975 2.13 26541 61 574 25414 2.21 25988 62 585 24956 2.29 25541 63 539 24556 2.15 25095 64 557 24510 2.22 25067 65 520 24017 2.12 24537 66 528 23830 2.17 24358 67 456 23819 1.88 24275 68 474 22831 2.03 23305 69 479 22672 2.07 23151 70 447 22446 1.95 22893 71 469 22135 2.07 22604 72 444 21716 2.00 22160 73 459 21349 2.10 21808 74 477 20908 2.23 21385 75 491 20849 2.30 21340 76 487 20146 2.36 20633 77 493 19117 2.51 19610 78 446 18156 2.40 18602 79 344 14910 2.26 15254 80 153 7012 2.14 7165 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16180 99710 13.96 115890 2 14832 99989 12.92 114821 3 14510 101044 12.56 115554 4 13615 100943 11.88 114558 5 12939 98657 11.59 111596 6 13374 94837 12.36 108211 7 12639 94875 11.76 107514 8 12119 94218 11.40 106337 9 12726 95435 11.77 108161 10 12639 96149 11.62 108788 11 12450 94960 11.59 107410 12 12877 95883 11.84 108760 13 12752 97717 11.54 110469 14 12266 98912 11.03 111178 15 12878 99941 11.41 112819 16 13064 100558 11.50 113622 17 12214 101341 10.76 113555 18 12701 102357 11.04 115058 19 12521 103238 10.82 115759 20 12307 102843 10.69 115150 21 12791 102598 11.09 115389 22 12556 102776 10.89 115332 23 11705 102311 10.27 114016 24 12450 102258 10.85 114708 25 11951 103058 10.39 115009 26 11836 102495 10.35 114331 27 11824 102911 10.31 114735 28 11760 102929 10.25 114689 29 11377 102923 9.95 114300 30 11423 102834 10.00 114257 31 11020 103730 9.60 114750 32 10554 102595 9.33 113149 33 10721 101464 9.56 112185 34 10611 101786 9.44 112397 35 9943 101642 8.91 111585 36 10024 101718 8.97 111742 37 10082 101325 9.05 111407 38 9404 100303 8.57 109707 39 9352 100324 8.53 109676 40 9170 100250 8.38 109420 41 8730 99617 8.06 108347 42 8487 98233 7.95 106720 43 8308 98113 7.81 106421 44 7924 95934 7.63 103858 45 7690 94746 7.51 102436 46 7521 94601 7.36 102122 47 7083 94171 7.00 101254 48 6986 93125 6.98 100111 49 6695 92972 6.72 99667 50 6233 90159 6.47 96392 51 6109 88916 6.43 95025 52 5719 89372 6.01 95091 53 5421 86634 5.89 92055 54 5404 85063 5.97 90467 55 5311 85048 5.88 90359 56 4638 83685 5.25 88323 57 4569 83294 5.20 87863 58 4339 81426 5.06 85765 59 4161 81232 4.87 85393 60 3809 79514 4.57 83323 61 3740 78169 4.57 81909 62 3456 76774 4.31 80230 63 3318 75813 4.19 79131 64 3173 76037 4.01 79210 65 3037 73822 3.95 76859 66 2871 72235 3.82 75106 67 2918 71733 3.91 74651 68 2673 71616 3.60 74289 69 2523 70756 3.44 73279 70 2448 69097 3.42 71545 71 2522 67194 3.62 69716 72 2298 67459 3.29 69757 73 2316 65580 3.41 67896 74 2119 64199 3.20 66318 75 2196 62441 3.40 64637 76 2137 61504 3.36 63641 77 2095 59027 3.43 61122 78 1808 54773 3.20 56581 79 1585 45215 3.39 46800 80 651 20518 3.08 21169 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8830 5386 62.11 14216 2 9289 4348 68.12 13637 3 8616 4199 67.23 12815 4 6796 3786 64.22 10582 5 6661 3582 65.03 10243 6 6528 3474 65.27 10002 7 6846 3768 64.50 10614 8 6574 3525 65.10 10099 9 6591 3198 67.33 9789 10 6743 3275 67.31 10018 11 6630 3314 66.67 9944 12 6395 3233 66.42 9628 13 6382 3128 67.11 9510 14 6291 3025 67.53 9316 15 6346 2971 68.11 9317 16 6218 2993 67.51 9211 17 5984 2872 67.57 8856 18 5851 2733 68.16 8584 19 5789 2565 69.30 8354 20 5624 2582 68.54 8206 21 5523 2543 68.47 8066 22 5551 2410 69.73 7961 23 5157 2460 67.70 7617 24 5459 2360 69.82 7819 25 5285 2332 69.38 7617 26 5212 2360 68.83 7572 27 4954 2154 69.70 7108 28 5012 2097 70.50 7109 29 4846 2147 69.30 6993 30 4801 2048 70.10 6849 31 4868 1975 71.14 6843 32 4745 1962 70.75 6707 33 4583 1939 70.27 6522 34 4635 1852 71.45 6487 35 4460 1824 70.97 6284 36 4411 1756 71.53 6167 37 4160 1770 70.15 5930 38 4288 1715 71.43 6003 39 4203 1701 71.19 5904 40 4175 1645 71.74 5820 41 4024 1583 71.77 5607 42 3789 1572 70.68 5361 43 3778 1468 72.02 5246 44 3742 1440 72.21 5182 45 3734 1442 72.14 5176 46 3543 1466 70.73 5009 47 3563 1398 71.82 4961 48 3500 1322 72.58 4822 49 3309 1377 70.61 4686 50 3339 1300 71.98 4639 51 3234 1344 70.64 4578 52 3046 1252 70.87 4298 53 2984 1239 70.66 4223 54 3068 1218 71.58 4286 55 2926 1122 72.28 4048 56 2819 1129 71.40 3948 57 2865 1160 71.18 4025 58 2787 1090 71.89 3877 59 2695 1052 71.92 3747 60 2549 1007 71.68 3556 61 2541 974 72.29 3515 62 2473 984 71.54 3457 63 2477 969 71.88 3446 64 2361 944 71.44 3305 65 2225 966 69.73 3191 66 2236 933 70.56 3169 67 2175 889 70.99 3064 68 2227 873 71.84 3100 69 2065 846 70.94 2911 70 2073 848 70.97 2921 71 2018 814 71.26 2832 72 1918 815 70.18 2733 73 1880 764 71.10 2644 74 1846 778 70.35 2624 75 1721 747 69.73 2468 76 1716 672 71.86 2388 77 1728 696 71.29 2424 78 1598 668 70.52 2266 79 1275 592 68.29 1867 80 842 424 66.51 1266 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3565 21332 14.32 24897 2 1370 19445 6.58 20815 3 1550 18307 7.81 19857 4 747 18549 3.87 19296 5 872 16320 5.07 17192 6 1131 15803 6.68 16934 7 610 16045 3.66 16655 8 701 17027 3.95 17728 9 569 15446 3.55 16015 10 573 15164 3.64 15737 11 537 15278 3.40 15815 12 487 15416 3.06 15903 13 489 15154 3.13 15643 14 451 14619 2.99 15070 15 462 14670 3.05 15132 16 424 14252 2.89 14676 17 401 13880 2.81 14281 18 451 13799 3.16 14250 19 368 13281 2.70 13649 20 363 12740 2.77 13103 21 314 12859 2.38 13173 22 296 12434 2.33 12730 23 318 12543 2.47 12861 24 281 12450 2.21 12731 25 284 11945 2.32 12229 26 257 11667 2.16 11924 27 276 11902 2.27 12178 28 263 11415 2.25 11678 29 252 11438 2.16 11690 30 212 11259 1.85 11471 31 247 11067 2.18 11314 32 215 10631 1.98 10846 33 236 10726 2.15 10962 34 196 10380 1.85 10576 35 174 10023 1.71 10197 36 200 10105 1.94 10305 37 207 9561 2.12 9768 38 180 9772 1.81 9952 39 154 9648 1.57 9802 40 162 9221 1.73 9383 41 160 9105 1.73 9265 42 180 8951 1.97 9131 43 138 8638 1.57 8776 44 165 8437 1.92 8602 45 143 8259 1.70 8402 46 146 8207 1.75 8353 47 139 7929 1.72 8068 48 141 7838 1.77 7979 49 152 7707 1.93 7859 50 128 7452 1.69 7580 51 134 7361 1.79 7495 52 143 7319 1.92 7462 53 124 6974 1.75 7098 54 110 6783 1.60 6893 55 99 6512 1.50 6611 56 109 6445 1.66 6554 57 121 6494 1.83 6615 58 133 6319 2.06 6452 59 103 6078 1.67 6181 60 110 6061 1.78 6171 61 113 5670 1.95 5783 62 107 5594 1.88 5701 63 99 5505 1.77 5604 64 86 5437 1.56 5523 65 91 5196 1.72 5287 66 90 5160 1.71 5250 67 95 5060 1.84 5155 68 95 5039 1.85 5134 69 97 4841 1.96 4938 70 91 4620 1.93 4711 71 80 4504 1.75 4584 72 86 4518 1.87 4604 73 70 4442 1.55 4512 74 75 4173 1.77 4248 75 83 4039 2.01 4122 76 68 3996 1.67 4064 77 75 3842 1.91 3917 78 64 3472 1.81 3536 79 58 3008 1.89 3066 80 43 2109 2.00 2152 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9401 72047 11.54 81448 2 6717 60308 10.02 67025 3 4506 58590 7.14 63096 4 3470 56121 5.82 59591 5 3604 53596 6.30 57200 6 4422 49495 8.20 53917 7 2772 49114 5.34 51886 8 2913 48112 5.71 51025 9 2996 48051 5.87 51047 10 2850 47890 5.62 50740 11 2510 46695 5.10 49205 12 2349 46169 4.84 48518 13 2411 46119 4.97 48530 14 2123 45986 4.41 48109 15 2315 45787 4.81 48102 16 2039 45435 4.29 47474 17 1854 44407 4.01 46261 18 1767 43649 3.89 45416 19 1628 42755 3.67 44383 20 1525 41753 3.52 43278 21 1513 40946 3.56 42459 22 1477 39828 3.58 41305 23 1430 39635 3.48 41065 24 1385 38932 3.44 40317 25 1318 38336 3.32 39654 26 1309 37953 3.33 39262 27 1221 37040 3.19 38261 28 1210 36502 3.21 37712 29 1125 36165 3.02 37290 30 1041 35040 2.89 36081 31 1054 35668 2.87 36722 32 994 34302 2.82 35296 33 1014 33552 2.93 34566 34 919 33422 2.68 34341 35 875 32960 2.59 33835 36 804 32262 2.43 33066 37 851 31992 2.59 32843 38 832 30740 2.64 31572 39 800 30591 2.55 31391 40 775 29926 2.52 30701 41 732 29332 2.43 30064 42 717 28560 2.45 29277 43 696 28426 2.39 29122 44 655 27685 2.31 28340 45 623 26746 2.28 27369 46 631 26571 2.32 27202 47 656 26067 2.45 26723 48 620 25608 2.36 26228 49 571 25173 2.22 25744 50 541 24638 2.15 25179 51 536 23772 2.21 24308 52 510 23453 2.13 23963 53 532 22552 2.30 23084 54 478 21985 2.13 22463 55 502 21795 2.25 22297 56 520 21168 2.40 21688 57 473 20961 2.21 21434 58 460 20249 2.22 20709 59 474 19933 2.32 20407 60 417 19656 2.08 20073 61 438 18865 2.27 19303 62 407 18476 2.16 18883 63 389 18157 2.10 18546 64 408 18003 2.22 18411 65 339 17330 1.92 17669 66 353 16977 2.04 17330 67 393 16922 2.27 17315 68 362 16702 2.12 17064 69 352 16040 2.15 16392 70 387 15723 2.40 16110 71 369 15181 2.37 15550 72 346 15219 2.22 15565 73 349 14500 2.35 14849 74 290 14113 2.01 14403 75 322 13697 2.30 14019 76 292 13371 2.14 13663 77 271 12933 2.05 13204 78 263 11888 2.16 12151 79 234 10610 2.16 10844 80 135 7130 1.86 7265