CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 143974 81660 63.81 225634 2 159279 79003 66.84 238282 3 153977 77121 66.63 231098 4 149368 73248 67.10 222616 5 148921 72825 67.16 221746 6 149623 70881 67.86 220504 7 154356 75674 67.10 230030 8 153626 71207 68.33 224833 9 151640 69209 68.66 220849 10 158235 70545 69.16 228780 11 159736 72051 68.91 231787 12 159670 69897 69.55 229567 13 161226 70307 69.63 231533 14 163042 71339 69.56 234381 15 164181 69577 70.24 233758 16 165854 69926 70.34 235780 17 165026 70951 69.93 235977 18 164404 69625 70.25 234029 19 164949 68918 70.53 233867 20 164188 69701 70.20 233889 21 165334 69263 70.48 234597 22 167083 69814 70.53 236897 23 167250 70166 70.45 237416 24 167747 69451 70.72 237198 25 169108 70281 70.64 239389 26 169082 70681 70.52 239763 27 166629 69413 70.59 236042 28 169783 70261 70.73 240044 29 168456 69401 70.82 237857 30 168261 68643 71.02 236904 31 170029 69707 70.92 239736 32 170468 69218 71.12 239686 33 169194 69198 70.97 238392 34 171838 69876 71.09 241714 35 169388 68981 71.06 238369 36 167888 67822 71.23 235710 37 167891 68655 70.98 236546 38 168198 68874 70.95 237072 39 168126 68093 71.17 236219 40 168684 68417 71.14 237101 41 165926 67769 71.00 233695 42 163141 66493 71.04 229634 43 163918 66399 71.17 230317 44 162541 67026 70.80 229567 45 160357 65550 70.98 225907 46 160982 66085 70.90 227067 47 159839 66565 70.60 226404 48 157897 65338 70.73 223235 49 157256 64850 70.80 222106 50 154322 64529 70.51 218851 51 150760 63256 70.44 214016 52 151042 62963 70.58 214005 53 150563 62784 70.57 213347 54 148220 62655 70.29 210875 55 148123 61641 70.61 209764 56 146715 61998 70.30 208713 57 145346 61475 70.28 206821 58 142782 61222 69.99 204004 59 140175 59948 70.04 200123 60 137298 59147 69.89 196445 61 136982 58857 69.95 195839 62 133624 57655 69.86 191279 63 131484 57401 69.61 188885 64 130296 56539 69.74 186835 65 127507 55953 69.50 183460 66 125730 54726 69.67 180456 67 124712 54557 69.57 179269 68 123059 53795 69.58 176854 69 119260 52896 69.27 172156 70 118704 53201 69.05 171905 71 116532 52546 68.92 169078 72 113155 51459 68.74 164614 73 111641 50950 68.66 162591 74 109760 50210 68.61 159970 75 105718 48998 68.33 154716 76 102844 48322 68.03 151166 77 98151 46781 67.72 144932 78 90038 43164 67.60 133202 79 71531 34729 67.32 106260 80 31718 15669 66.93 47387 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28382 341247 7.68 369629 2 19530 351577 5.26 371107 3 16325 354298 4.40 370623 4 13259 351148 3.64 364407 5 14179 340298 4.00 354477 6 14328 343827 4.00 358155 7 12164 347030 3.39 359194 8 12070 353115 3.31 365185 9 11565 348192 3.21 359757 10 11552 345297 3.24 356849 11 11678 347408 3.25 359086 12 10864 352730 2.99 363594 13 10835 350253 3.00 361088 14 10709 350468 2.97 361177 15 10552 361882 2.83 372434 16 10289 359862 2.78 370151 17 10182 355177 2.79 365359 18 9911 364727 2.65 374638 19 9646 360969 2.60 370615 20 9556 360808 2.58 370364 21 9757 367458 2.59 377215 22 9539 362991 2.56 372530 23 9585 366739 2.55 376324 24 9284 372370 2.43 381654 25 9361 368332 2.48 377693 26 9236 365537 2.46 374773 27 9128 375431 2.37 384559 28 8981 370073 2.37 379054 29 9050 374412 2.36 383462 30 8874 371135 2.34 380009 31 8634 374681 2.25 383315 32 8676 371047 2.28 379723 33 8712 376275 2.26 384987 34 8434 371139 2.22 379573 35 8750 367835 2.32 376585 36 8453 369058 2.24 377511 37 8435 362875 2.27 371310 38 8457 362238 2.28 370695 39 8184 368105 2.17 376289 40 8090 364952 2.17 373042 41 8057 361360 2.18 369417 42 7786 364009 2.09 371795 43 7848 357049 2.15 364897 44 7884 351060 2.20 358944 45 7729 356780 2.12 364509 46 7631 349111 2.14 356742 47 7856 347436 2.21 355292 48 7555 345502 2.14 353057 49 7481 341777 2.14 349258 50 8386 334744 2.44 343130 51 7432 338173 2.15 345605 52 7670 330070 2.27 337740 53 7376 327225 2.20 334601 54 6954 326895 2.08 333849 55 7068 323078 2.14 330146 56 7025 318644 2.16 325669 57 6807 320881 2.08 327688 58 6724 311262 2.11 317986 59 6726 308535 2.13 315261 60 6718 307587 2.14 314305 61 6603 298750 2.16 305353 62 6509 293807 2.17 300316 63 6456 293789 2.15 300245 64 6409 287942 2.18 294351 65 6292 283177 2.17 289469 66 6183 280855 2.15 287038 67 6190 274830 2.20 281020 68 6066 270328 2.19 276394 69 6048 268108 2.21 274156 70 6021 261672 2.25 267693 71 5992 258078 2.27 264070 72 5878 256192 2.24 262070 73 5830 250327 2.28 256157 74 5883 244491 2.35 250374 75 5668 242538 2.28 248206 76 5579 234012 2.33 239591 77 5681 222647 2.49 228328 78 5341 204855 2.54 210196 79 4390 161842 2.64 166232 80 1939 72346 2.61 74285 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 90317 1058609 7.86 1148926 2 83788 1054135 7.36 1137923 3 74662 1059281 6.58 1133943 4 68729 1049477 6.15 1118206 5 67342 1017702 6.21 1085044 6 66705 989855 6.31 1056560 7 60917 990266 5.80 1051183 8 58733 979203 5.66 1037936 9 61351 992202 5.82 1053553 10 60656 1004365 5.70 1065021 11 59288 985762 5.67 1045050 12 58578 986685 5.60 1045263 13 59236 1004155 5.57 1063391 14 57370 998677 5.43 1056047 15 58215 1012192 5.44 1070407 16 57323 1026095 5.29 1083418 17 56191 1016426 5.24 1072617 18 55811 1030211 5.14 1086022 19 56469 1040940 5.15 1097409 20 54405 1034406 5.00 1088811 21 55787 1041820 5.08 1097607 22 54853 1039796 5.01 1094649 23 52609 1039658 4.82 1092267 24 52052 1044688 4.75 1096740 25 52714 1046552 4.80 1099266 26 50665 1042851 4.63 1093516 27 50823 1049151 4.62 1099974 28 49775 1055031 4.51 1104806 29 49414 1042959 4.52 1092373 30 48122 1046775 4.40 1094897 31 48132 1068175 4.31 1116307 32 46770 1048821 4.27 1095591 33 45601 1044716 4.18 1090317 34 44788 1051976 4.08 1096764 35 44539 1046848 4.08 1091387 36 43059 1045919 3.95 1088978 37 42903 1049195 3.93 1092098 38 41839 1035798 3.88 1077637 39 41127 1036827 3.82 1077954 40 40821 1041490 3.77 1082311 41 39238 1028916 3.67 1068154 42 38365 1021200 3.62 1059565 43 37468 1022005 3.54 1059473 44 36407 1003798 3.50 1040205 45 35556 995347 3.45 1030903 46 34859 999116 3.37 1033975 47 34064 986155 3.34 1020219 48 33348 986034 3.27 1019382 49 32800 983843 3.23 1016643 50 34000 950064 3.46 984064 51 31063 949353 3.17 980416 52 31432 949013 3.21 980445 53 29707 923687 3.12 953394 54 28465 913533 3.02 941998 55 28362 910285 3.02 938647 56 27110 897785 2.93 924895 57 26966 895992 2.92 922958 58 25938 882413 2.86 908351 59 25387 875173 2.82 900560 60 25070 859990 2.83 885060 61 24625 849199 2.82 873824 62 23812 833515 2.78 857327 63 23533 828213 2.76 851746 64 22968 827649 2.70 850617 65 22365 806311 2.70 828676 66 21834 791117 2.69 812951 67 21719 787183 2.68 808902 68 20946 781395 2.61 802341 69 20944 765459 2.66 786403 70 20244 749867 2.63 770111 71 20269 737473 2.67 757742 72 19789 728222 2.65 748011 73 19670 712386 2.69 732056 74 19460 695828 2.72 715288 75 19131 680600 2.73 699731 76 19297 666492 2.81 685789 77 18714 633095 2.87 651809 78 17561 581918 2.93 599479 79 14276 466352 2.97 480628 80 5739 200201 2.79 205940 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 103200 63298 61.98 166498 2 99722 53460 65.10 153182 3 92153 49623 65.00 141776 4 81845 45451 64.30 127296 5 80400 43357 64.97 123757 6 79627 41918 65.51 121545 7 80349 44586 64.31 124935 8 78359 39742 66.35 118101 9 76714 38352 66.67 115066 10 78224 38287 67.14 116511 11 78006 38348 67.04 116354 12 74510 36438 67.16 110948 13 75141 35630 67.83 110771 14 74398 35774 67.53 110172 15 73624 34668 67.99 108292 16 72990 33425 68.59 106415 17 70968 33537 67.91 104505 18 68722 32248 68.06 100970 19 68074 30959 68.74 99033 20 65640 30945 67.96 96585 21 65116 30144 68.36 95260 22 63559 29435 68.35 92994 23 62972 29080 68.41 92052 24 62450 27865 69.15 90315 25 61735 27656 69.06 89391 26 59893 27053 68.89 86946 27 57894 25904 69.09 83798 28 58165 25640 69.41 83805 29 56368 25066 69.22 81434 30 55001 24350 69.31 79351 31 55030 24269 69.40 79299 32 53574 23465 69.54 77039 33 52838 22873 69.79 75711 34 52502 23136 69.41 75638 35 50855 22183 69.63 73038 36 49692 21128 70.17 70820 37 48327 21051 69.66 69378 38 47744 20826 69.63 68570 39 47200 20049 70.19 67249 40 46929 19808 70.32 66737 41 44561 19272 69.81 63833 42 42805 18714 69.58 61519 43 42674 17983 70.35 60657 44 41730 17663 70.26 59393 45 40475 17447 69.88 57922 46 39696 17321 69.62 57017 47 39018 17120 69.50 56138 48 37985 16250 70.04 54235 49 36742 15891 69.81 52633 50 36090 15731 69.64 51821 51 34465 14846 69.89 49311 52 34137 14759 69.82 48896 53 33262 14583 69.52 47845 54 32549 14181 69.65 46730 55 32011 13893 69.73 45904 56 31316 13786 69.43 45102 57 30661 13544 69.36 44205 58 29542 13381 68.83 42923 59 28682 12762 69.21 41444 60 28123 12503 69.22 40626 61 27176 12194 69.03 39370 62 26352 11897 68.90 38249 63 25810 11515 69.15 37325 64 25475 11191 69.48 36666 65 24516 10915 69.19 35431 66 23540 10484 69.19 34024 67 23052 10399 68.91 33451 68 22383 10372 68.33 32755 69 22021 9911 68.96 31932 70 21364 9969 68.18 31333 71 20941 9668 68.41 30609 72 20038 9478 67.89 29516 73 19644 9415 67.60 29059 74 18944 9216 67.27 28160 75 18204 8722 67.61 26926 76 17627 8387 67.76 26014 77 16548 8095 67.15 24643 78 15278 7846 66.07 23124 79 13145 6833 65.80 19978 80 8600 4676 64.78 13276 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24273 256940 8.63 281213 2 13272 224449 5.58 237721 3 12055 217520 5.25 229575 4 8249 204784 3.87 213033 5 9091 190810 4.55 199901 6 10028 187602 5.07 197630 7 6859 187969 3.52 194828 8 7186 189929 3.65 197115 9 6554 177805 3.56 184359 10 6392 175008 3.52 181400 11 6046 173212 3.37 179258 12 5725 172613 3.21 178338 13 5488 167863 3.17 173351 14 5280 164199 3.12 169479 15 5072 167615 2.94 172687 16 5073 162335 3.03 167408 17 4741 156801 2.93 161542 18 4550 156204 2.83 160754 19 4430 152058 2.83 156488 20 4132 147828 2.72 151960 21 4021 146974 2.66 150995 22 3886 142253 2.66 146139 23 3808 142190 2.61 145998 24 3728 140461 2.59 144189 25 3580 135453 2.57 139033 26 3414 132764 2.51 136178 27 3368 133748 2.46 137116 28 3246 129150 2.45 132396 29 3293 129314 2.48 132607 30 3017 124065 2.37 127082 31 2859 122950 2.27 125809 32 2741 119131 2.25 121872 33 2668 119589 2.18 122257 34 2566 114951 2.18 117517 35 2514 112344 2.19 114858 36 2345 110516 2.08 112861 37 2346 107061 2.14 109407 38 2240 104661 2.10 106901 39 2227 104417 2.09 106644 40 2094 101685 2.02 103779 41 2113 99317 2.08 101430 42 2001 97420 2.01 99421 43 1984 94864 2.05 96848 44 1962 90826 2.11 92788 45 1821 91039 1.96 92860 46 1737 87964 1.94 89701 47 1809 86524 2.05 88333 48 1670 84381 1.94 86051 49 1627 81847 1.95 83474 50 1698 79591 2.09 81289 51 1527 78622 1.91 80149 52 1499 76096 1.93 77595 53 1535 73547 2.04 75082 54 1425 72467 1.93 73892 55 1401 71257 1.93 72658 56 1400 68973 1.99 70373 57 1399 69317 1.98 70716 58 1310 65952 1.95 67262 59 1241 64622 1.88 65863 60 1220 63357 1.89 64577 61 1289 61155 2.06 62444 62 1166 59512 1.92 60678 63 1119 58084 1.89 59203 64 1137 56713 1.97 57850 65 1101 55162 1.96 56263 66 1043 53689 1.91 54732 67 1067 52009 2.01 53076 68 1057 50749 2.04 51806 69 1022 49387 2.03 50409 70 996 48843 2.00 49839 71 942 46977 1.97 47919 72 907 46165 1.93 47072 73 906 44719 1.99 45625 74 935 43447 2.11 44382 75 907 43007 2.07 43914 76 900 40358 2.18 41258 77 774 38886 1.95 39660 78 741 35759 2.03 36500 79 643 30606 2.06 31249 80 438 20400 2.10 20838 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67571 816171 7.65 883742 2 52222 684806 7.09 737028 3 39073 647818 5.69 686891 4 32559 614280 5.03 646839 5 32639 585102 5.28 617741 6 34065 551649 5.82 585714 7 25490 542884 4.48 568374 8 24838 526787 4.50 551625 9 24747 526797 4.49 551544 10 23555 523171 4.31 546726 11 22621 502693 4.31 525314 12 20693 493900 4.02 514593 13 20398 492806 3.97 513204 14 19553 482405 3.90 501958 15 18716 479783 3.75 498499 16 17989 476486 3.64 494475 17 16928 462063 3.53 478991 18 16477 458723 3.47 475200 19 16011 450241 3.43 466252 20 14826 438129 3.27 452955 21 14577 432251 3.26 446828 22 14022 421792 3.22 435814 23 13348 414391 3.12 427739 24 12802 407162 3.05 419964 25 12513 401050 3.03 413563 26 12068 392096 2.99 404164 27 11847 387501 2.97 399348 28 11179 381070 2.85 392249 29 10591 371178 2.77 381769 30 10172 365073 2.71 375245 31 10113 365958 2.69 376071 32 9377 352796 2.59 362173 33 9285 344562 2.62 353847 34 8795 341800 2.51 350595 35 8533 334592 2.49 343125 36 8162 328831 2.42 336993 37 7998 324117 2.41 332115 38 7446 314830 2.31 322276 39 7273 308076 2.31 315349 40 7159 305659 2.29 312818 41 6876 297101 2.26 303977 42 6600 289951 2.23 296551 43 6457 284688 2.22 291145 44 6178 275222 2.20 281400 45 6096 267911 2.22 274007 46 5971 265818 2.20 271789 47 5623 259614 2.12 265237 48 5572 256910 2.12 262482 49 5457 252283 2.12 257740 50 5261 240294 2.14 245555 51 5176 236102 2.15 241278 52 5056 234298 2.11 239354 53 4887 222375 2.15 227262 54 4645 217250 2.09 221895 55 4756 213907 2.18 218663 56 4440 207994 2.09 212434 57 4524 206435 2.14 210959 58 4280 199034 2.11 203314 59 4140 195752 2.07 199892 60 4030 188900 2.09 192930 61 3968 185393 2.10 189361 62 3914 179704 2.13 183618 63 3904 175989 2.17 179893 64 3891 174779 2.18 178670 65 3591 167083 2.10 170674 66 3480 162729 2.09 166209 67 3515 160682 2.14 164197 68 3471 159408 2.13 162879 69 3717 153835 2.36 157552 70 3188 148999 2.09 152187 71 3089 145213 2.08 148302 72 3186 142944 2.18 146130 73 2977 137535 2.12 140512 74 3056 132819 2.25 135875 75 2865 128830 2.18 131695 76 2949 125757 2.29 128706 77 2620 120255 2.13 122875 78 2413 111452 2.12 113865 79 2077 97334 2.09 99411 80 1397 65001 2.10 66398