CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 101 46 68.71 147 2 97 39 71.32 136 3 103 39 72.54 142 4 91 26 77.78 117 5 92 29 76.03 121 6 80 48 62.50 128 7 97 32 75.19 129 8 91 39 70.00 130 9 99 34 74.44 133 10 86 36 70.49 122 11 105 35 75.00 140 12 110 30 78.57 140 13 110 37 74.83 147 14 98 42 70.00 140 15 112 39 74.17 151 16 95 45 67.86 140 17 95 28 77.24 123 18 79 27 74.53 106 19 121 32 79.08 153 20 99 30 76.74 129 21 126 28 81.82 154 22 118 28 80.82 146 23 106 33 76.26 139 24 91 29 75.83 120 25 109 21 83.85 130 26 106 40 72.60 146 27 97 27 78.23 124 28 126 24 84.00 150 29 104 29 78.20 133 30 109 42 72.19 151 31 132 36 78.57 168 32 99 32 75.57 131 33 127 35 78.40 162 34 102 23 81.60 125 35 121 37 76.58 158 36 103 29 78.03 132 37 99 32 75.57 131 38 106 37 74.13 143 39 117 32 78.52 149 40 117 29 80.14 146 41 115 38 75.16 153 42 116 34 77.33 150 43 116 23 83.45 139 44 108 22 83.08 130 45 101 20 83.47 121 46 103 34 75.18 137 47 112 35 76.19 147 48 97 29 76.98 126 49 114 33 77.55 147 50 87 36 70.73 123 51 103 31 76.87 134 52 107 26 80.45 133 53 92 26 77.97 118 54 99 28 77.95 127 55 99 19 83.90 118 56 100 21 82.64 121 57 103 26 79.84 129 58 88 27 76.52 115 59 89 32 73.55 121 60 85 25 77.27 110 61 82 25 76.64 107 62 66 24 73.33 90 63 84 27 75.68 111 64 70 26 72.92 96 65 82 19 81.19 101 66 96 26 78.69 122 67 73 26 73.74 99 68 76 29 72.38 105 69 73 21 77.66 94 70 71 19 78.89 90 71 69 14 83.13 83 72 85 23 78.70 108 73 64 20 76.19 84 74 67 16 80.72 83 75 60 22 73.17 82 76 60 18 76.92 78 77 67 17 79.76 84 78 48 18 72.73 66 79 48 20 70.59 68 80 24 6 80.00 30 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 219 10.98 246 2 7 180 3.74 187 3 10 200 4.76 210 4 10 185 5.13 195 5 4 212 1.85 216 6 11 193 5.39 204 7 11 210 4.98 221 8 4 196 2.00 200 9 10 189 5.03 199 10 4 208 1.89 212 11 3 208 1.42 211 12 13 210 5.83 223 13 8 187 4.10 195 14 5 207 2.36 212 15 6 214 2.73 220 16 9 191 4.50 200 17 6 206 2.83 212 18 7 220 3.08 227 19 5 200 2.44 205 20 9 202 4.27 211 21 7 215 3.15 222 22 4 229 1.72 233 23 9 206 4.19 215 24 10 185 5.13 195 25 6 219 2.67 225 26 6 240 2.44 246 27 8 235 3.29 243 28 7 201 3.37 208 29 13 233 5.28 246 30 5 202 2.42 207 31 6 190 3.06 196 32 11 223 4.70 234 33 2 232 0.85 234 34 6 189 3.08 195 35 6 188 3.09 194 36 9 206 4.19 215 37 10 198 4.81 208 38 6 197 2.96 203 39 6 196 2.97 202 40 6 199 2.93 205 41 5 238 2.06 243 42 3 205 1.44 208 43 6 197 2.96 203 44 8 198 3.88 206 45 3 218 1.36 221 46 5 182 2.67 187 47 4 201 1.95 205 48 10 190 5.00 200 49 3 191 1.55 194 50 6 188 3.09 194 51 5 189 2.58 194 52 4 195 2.01 199 53 3 168 1.75 171 54 5 176 2.76 181 55 3 188 1.57 191 56 5 157 3.09 162 57 3 195 1.52 198 58 3 185 1.60 188 59 2 189 1.05 191 60 3 195 1.52 198 61 9 157 5.42 166 62 3 159 1.85 162 63 1 186 0.53 187 64 4 175 2.23 179 65 4 165 2.37 169 66 3 159 1.85 162 67 1 135 0.74 136 68 9 146 5.81 155 69 2 169 1.17 171 70 5 138 3.50 143 71 3 139 2.11 142 72 5 145 3.33 150 73 7 141 4.73 148 74 0 123 0.00 123 75 1 133 0.75 134 76 3 140 2.10 143 77 4 97 3.96 101 78 2 116 1.69 118 79 2 86 2.27 88 80 1 44 2.22 45 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 42 588 6.67 630 2 64 592 9.76 656 3 38 605 5.91 643 4 45 616 6.81 661 5 52 616 7.78 668 6 45 582 7.18 627 7 40 589 6.36 629 8 34 554 5.78 588 9 36 541 6.24 577 10 35 586 5.64 621 11 40 563 6.63 603 12 29 505 5.43 534 13 33 567 5.50 600 14 39 569 6.41 608 15 28 605 4.42 633 16 34 593 5.42 627 17 30 600 4.76 630 18 39 588 6.22 627 19 43 629 6.40 672 20 40 605 6.20 645 21 42 557 7.01 599 22 31 605 4.87 636 23 34 605 5.32 639 24 25 607 3.96 632 25 35 574 5.75 609 26 22 587 3.61 609 27 41 565 6.77 606 28 30 619 4.62 649 29 25 637 3.78 662 30 27 624 4.15 651 31 28 644 4.17 672 32 24 622 3.72 646 33 31 598 4.93 629 34 22 590 3.59 612 35 30 614 4.66 644 36 25 633 3.80 658 37 15 574 2.55 589 38 27 566 4.55 593 39 27 568 4.54 595 40 26 604 4.13 630 41 26 564 4.41 590 42 26 578 4.30 604 43 24 567 4.06 591 44 25 565 4.24 590 45 17 560 2.95 577 46 18 545 3.20 563 47 23 551 4.01 574 48 17 544 3.03 561 49 15 592 2.47 607 50 19 566 3.25 585 51 16 554 2.81 570 52 17 500 3.29 517 53 13 530 2.39 543 54 15 522 2.79 537 55 20 513 3.75 533 56 26 501 4.93 527 57 10 514 1.91 524 58 9 496 1.78 505 59 19 500 3.66 519 60 15 479 3.04 494 61 11 468 2.30 479 62 10 476 2.06 486 63 18 470 3.69 488 64 15 460 3.16 475 65 13 436 2.90 449 66 10 461 2.12 471 67 14 409 3.31 423 68 11 460 2.34 471 69 14 448 3.03 462 70 7 437 1.58 444 71 5 430 1.15 435 72 5 406 1.22 411 73 9 391 2.25 400 74 8 370 2.12 378 75 18 374 4.59 392 76 14 347 3.88 361 77 9 374 2.35 383 78 5 327 1.51 332 79 6 251 2.33 257 80 5 130 3.70 135 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74 34 68.52 108 2 58 22 72.50 80 3 43 21 67.19 64 4 39 25 60.94 64 5 42 16 72.41 58 6 43 17 71.67 60 7 60 25 70.59 85 8 37 15 71.15 52 9 47 15 75.81 62 10 37 16 69.81 53 11 30 20 60.00 50 12 35 17 67.31 52 13 43 15 74.14 58 14 44 17 72.13 61 15 49 9 84.48 58 16 44 7 86.27 51 17 43 10 81.13 53 18 37 11 77.08 48 19 28 17 62.22 45 20 33 13 71.74 46 21 34 12 73.91 46 22 28 11 71.79 39 23 30 12 71.43 42 24 35 14 71.43 49 25 32 14 69.57 46 26 29 13 69.05 42 27 37 12 75.51 49 28 33 7 82.50 40 29 30 9 76.92 39 30 30 7 81.08 37 31 24 13 64.86 37 32 27 9 75.00 36 33 30 9 76.92 39 34 26 9 74.29 35 35 34 7 82.93 41 36 29 12 70.73 41 37 24 7 77.42 31 38 27 8 77.14 35 39 23 11 67.65 34 40 33 4 89.19 37 41 21 7 75.00 28 42 22 8 73.33 30 43 19 6 76.00 25 44 20 5 80.00 25 45 31 7 81.58 38 46 18 11 62.07 29 47 31 11 73.81 42 48 13 6 68.42 19 49 22 4 84.62 26 50 23 2 92.00 25 51 23 8 74.19 31 52 12 3 80.00 15 53 21 9 70.00 30 54 20 7 74.07 27 55 19 1 95.00 20 56 12 5 70.59 17 57 14 2 87.50 16 58 23 4 85.19 27 59 12 6 66.67 18 60 13 4 76.47 17 61 16 3 84.21 19 62 11 5 68.75 16 63 8 3 72.73 11 64 10 3 76.92 13 65 19 6 76.00 25 66 15 1 93.75 16 67 15 2 88.24 17 68 14 4 77.78 18 69 5 2 71.43 7 70 11 4 73.33 15 71 8 6 57.14 14 72 11 1 91.67 12 73 8 3 72.73 11 74 11 3 78.57 14 75 6 2 75.00 8 76 12 2 85.71 14 77 3 2 60.00 5 78 7 7 50.00 14 79 11 5 68.75 16 80 3 2 60.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 148 12.43 169 2 10 128 7.25 138 3 5 120 4.00 125 4 7 107 6.14 114 5 2 98 2.00 100 6 4 92 4.17 96 7 3 96 3.03 99 8 8 105 7.08 113 9 3 81 3.57 84 10 2 100 1.96 102 11 2 80 2.44 82 12 3 80 3.61 83 13 3 71 4.05 74 14 4 94 4.08 98 15 4 93 4.12 97 16 4 78 4.88 82 17 5 74 6.33 79 18 3 69 4.17 72 19 8 67 10.67 75 20 2 79 2.47 81 21 2 68 2.86 70 22 1 71 1.39 72 23 3 67 4.29 70 24 0 67 0.00 67 25 4 81 4.71 85 26 2 59 3.28 61 27 2 71 2.74 73 28 2 67 2.90 69 29 1 64 1.54 65 30 1 69 1.43 70 31 0 61 0.00 61 32 3 70 4.11 73 33 4 62 6.06 66 34 0 54 0.00 54 35 2 46 4.17 48 36 1 54 1.82 55 37 2 58 3.33 60 38 0 36 0.00 36 39 0 52 0.00 52 40 0 47 0.00 47 41 2 55 3.51 57 42 1 58 1.69 59 43 1 46 2.13 47 44 3 60 4.76 63 45 0 50 0.00 50 46 3 54 5.26 57 47 0 39 0.00 39 48 0 44 0.00 44 49 1 39 2.50 40 50 1 39 2.50 40 51 2 37 5.13 39 52 0 36 0.00 36 53 2 34 5.56 36 54 2 40 4.76 42 55 1 31 3.12 32 56 0 36 0.00 36 57 1 37 2.63 38 58 1 31 3.12 32 59 1 34 2.86 35 60 0 33 0.00 33 61 1 34 2.86 35 62 0 29 0.00 29 63 0 36 0.00 36 64 2 25 7.41 27 65 0 29 0.00 29 66 1 33 2.94 34 67 2 27 6.90 29 68 1 28 3.45 29 69 0 22 0.00 22 70 3 23 11.54 26 71 0 28 0.00 28 72 0 27 0.00 27 73 0 20 0.00 20 74 0 21 0.00 21 75 1 21 4.55 22 76 0 15 0.00 15 77 0 18 0.00 18 78 0 16 0.00 16 79 0 16 0.00 16 80 0 10 0.00 10 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 451 7.20 486 2 29 401 6.74 430 3 16 354 4.32 370 4 19 316 5.67 335 5 19 318 5.64 337 6 17 293 5.48 310 7 17 290 5.54 307 8 12 293 3.93 305 9 14 275 4.84 289 10 18 255 6.59 273 11 10 297 3.26 307 12 13 264 4.69 277 13 14 284 4.70 298 14 7 269 2.54 276 15 13 235 5.24 248 16 6 243 2.41 249 17 11 234 4.49 245 18 8 240 3.23 248 19 7 204 3.32 211 20 5 202 2.42 207 21 9 183 4.69 192 22 6 224 2.61 230 23 12 215 5.29 227 24 10 192 4.95 202 25 6 200 2.91 206 26 11 199 5.24 210 27 8 186 4.12 194 28 3 215 1.38 218 29 8 192 4.00 200 30 9 190 4.52 199 31 9 185 4.64 194 32 5 187 2.60 192 33 4 176 2.22 180 34 8 170 4.49 178 35 2 168 1.18 170 36 5 139 3.47 144 37 4 151 2.58 155 38 3 172 1.71 175 39 1 140 0.71 141 40 3 138 2.13 141 41 1 164 0.61 165 42 2 119 1.65 121 43 4 154 2.53 158 44 4 133 2.92 137 45 1 127 0.78 128 46 4 128 3.03 132 47 6 123 4.65 129 48 2 120 1.64 122 49 4 128 3.03 132 50 4 118 3.28 122 51 0 109 0.00 109 52 3 147 2.00 150 53 3 99 2.94 102 54 2 96 2.04 98 55 3 98 2.97 101 56 1 111 0.89 112 57 1 99 1.00 100 58 0 94 0.00 94 59 2 91 2.15 93 60 1 96 1.03 97 61 4 91 4.21 95 62 1 107 0.93 108 63 3 93 3.12 96 64 0 77 0.00 77 65 1 90 1.10 91 66 0 71 0.00 71 67 4 74 5.13 78 68 1 82 1.20 83 69 0 74 0.00 74 70 2 76 2.56 78 71 2 54 3.57 56 72 3 69 4.17 72 73 3 61 4.69 64 74 1 65 1.52 66 75 3 63 4.55 66 76 0 60 0.00 60 77 0 60 0.00 60 78 0 43 0.00 43 79 1 41 2.38 42 80 0 34 0.00 34