/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_9_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_9_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
4994
Pairs without alignments under any condition
2979
Pairs that did not map uniquely
2027
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
139334
Methylated C's in CpG context
15209
Methylated C's in CHG context
948
Methylated C's in CHH context
3888
Methylated C's in Unknown context
385
Unmethylated C's in CpG context
4602
Unmethylated C's in CHG context
29731
Unmethylated C's in CHH context
84956
Unmethylated C's in Unknown context
1784
Percentage methylation (CpG context)
76.8%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
4.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1324
original top strand
CTOT
1206
complementary to original top strand
CTOB
1070
complementary to original bottom strand
OB
1394
original bottom strand
Deduplication
Alignments analysed
4994
Unique alignments
4994
Duplicates removed
0
Duplicated alignments were found at 0 different positions