zr2096_8_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4760 lines in total Total number of methylation call strings processed: 9520 Final Cytosine Methylation Report ================================= Total number of C's analysed: 79951 Total methylated C's in CpG context: 6529 Total methylated C's in CHG context: 440 Total methylated C's in CHH context: 2567 Total C to T conversions in CpG context: 3223 Total C to T conversions in CHG context: 16761 Total C to T conversions in CHH context: 50431 C methylated in CpG context: 67.0% C methylated in CHG context: 2.6% C methylated in CHH context: 4.8%