CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 55 31 63.95 86 2 73 29 71.57 102 3 70 38 64.81 108 4 65 27 70.65 92 5 61 43 58.65 104 6 55 35 61.11 90 7 70 38 64.81 108 8 75 27 73.53 102 9 62 35 63.92 97 10 62 34 64.58 96 11 70 36 66.04 106 12 74 33 69.16 107 13 73 39 65.18 112 14 67 41 62.04 108 15 66 26 71.74 92 16 72 29 71.29 101 17 68 37 64.76 105 18 79 33 70.54 112 19 71 36 66.36 107 20 71 38 65.14 109 21 63 37 63.00 100 22 50 30 62.50 80 23 66 38 63.46 104 24 71 31 69.61 102 25 61 41 59.80 102 26 79 29 73.15 108 27 69 33 67.65 102 28 65 41 61.32 106 29 69 38 64.49 107 30 67 36 65.05 103 31 62 42 59.62 104 32 73 36 66.97 109 33 82 26 75.93 108 34 76 28 73.08 104 35 81 44 64.80 125 36 72 30 70.59 102 37 70 41 63.06 111 38 84 24 77.78 108 39 59 45 56.73 104 40 66 33 66.67 99 41 75 25 75.00 100 42 66 33 66.67 99 43 72 23 75.79 95 44 67 21 76.14 88 45 62 35 63.92 97 46 72 25 74.23 97 47 54 26 67.50 80 48 75 39 65.79 114 49 74 32 69.81 106 50 70 36 66.04 106 51 69 22 75.82 91 52 55 23 70.51 78 53 58 27 68.24 85 54 73 26 73.74 99 55 63 31 67.02 94 56 64 29 68.82 93 57 55 26 67.90 81 58 60 18 76.92 78 59 69 34 66.99 103 60 61 27 69.32 88 61 59 33 64.13 92 62 61 25 70.93 86 63 54 31 63.53 85 64 64 23 73.56 87 65 50 28 64.10 78 66 46 30 60.53 76 67 46 19 70.77 65 68 48 27 64.00 75 69 58 35 62.37 93 70 52 24 68.42 76 71 40 25 61.54 65 72 46 18 71.88 64 73 51 20 71.83 71 74 46 24 65.71 70 75 47 27 63.51 74 76 41 22 65.08 63 77 54 19 73.97 73 78 36 28 56.25 64 79 28 19 59.57 47 80 20 14 58.82 34 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 17 187 8.33 204 2 5 177 2.75 182 3 11 176 5.88 187 4 4 185 2.12 189 5 4 150 2.60 154 6 2 164 1.20 166 7 3 169 1.74 172 8 7 183 3.68 190 9 4 174 2.25 178 10 5 169 2.87 174 11 6 163 3.55 169 12 7 180 3.74 187 13 3 196 1.51 199 14 5 165 2.94 170 15 5 178 2.73 183 16 8 181 4.23 189 17 5 209 2.34 214 18 5 178 2.73 183 19 7 199 3.40 206 20 4 186 2.11 190 21 2 175 1.13 177 22 6 169 3.43 175 23 7 198 3.41 205 24 8 176 4.35 184 25 4 161 2.42 165 26 5 177 2.75 182 27 7 157 4.27 164 28 5 180 2.70 185 29 4 174 2.25 178 30 7 179 3.76 186 31 4 183 2.14 187 32 4 163 2.40 167 33 5 162 2.99 167 34 3 198 1.49 201 35 4 181 2.16 185 36 5 182 2.67 187 37 5 176 2.76 181 38 5 190 2.56 195 39 6 175 3.31 181 40 3 193 1.53 196 41 5 186 2.62 191 42 2 170 1.16 172 43 1 153 0.65 154 44 4 192 2.04 196 45 4 185 2.12 189 46 3 161 1.83 164 47 5 164 2.96 169 48 3 170 1.73 173 49 3 198 1.49 201 50 6 145 3.97 151 51 1 164 0.61 165 52 2 151 1.31 153 53 2 163 1.21 165 54 7 147 4.55 154 55 8 146 5.19 154 56 5 134 3.60 139 57 3 144 2.04 147 58 2 157 1.26 159 59 2 164 1.20 166 60 2 138 1.43 140 61 3 133 2.21 136 62 7 157 4.27 164 63 3 132 2.22 135 64 0 99 0.00 99 65 0 158 0.00 158 66 3 134 2.19 137 67 0 133 0.00 133 68 3 123 2.38 126 69 4 129 3.01 133 70 3 129 2.27 132 71 5 111 4.31 116 72 0 129 0.00 129 73 1 110 0.90 111 74 3 136 2.16 139 75 4 120 3.23 124 76 2 111 1.77 113 77 0 116 0.00 116 78 1 121 0.82 122 79 0 87 0.00 87 80 0 41 0.00 41 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 56 568 8.97 624 2 62 577 9.70 639 3 49 606 7.48 655 4 43 557 7.17 600 5 35 545 6.03 580 6 39 485 7.44 524 7 44 521 7.79 565 8 35 514 6.38 549 9 55 514 9.67 569 10 39 545 6.68 584 11 35 542 6.07 577 12 42 523 7.43 565 13 40 517 7.18 557 14 34 534 5.99 568 15 41 563 6.79 604 16 43 498 7.95 541 17 42 477 8.09 519 18 44 534 7.61 578 19 44 536 7.59 580 20 40 537 6.93 577 21 46 543 7.81 589 22 31 576 5.11 607 23 34 562 5.70 596 24 36 523 6.44 559 25 36 536 6.29 572 26 31 529 5.54 560 27 33 522 5.95 555 28 38 535 6.63 573 29 30 532 5.34 562 30 40 530 7.02 570 31 25 542 4.41 567 32 36 524 6.43 560 33 26 501 4.93 527 34 28 507 5.23 535 35 27 532 4.83 559 36 37 533 6.49 570 37 31 552 5.32 583 38 26 524 4.73 550 39 28 501 5.29 529 40 32 553 5.47 585 41 26 508 4.87 534 42 29 500 5.48 529 43 26 535 4.63 561 44 26 509 4.86 535 45 24 484 4.72 508 46 29 485 5.64 514 47 23 473 4.64 496 48 21 491 4.10 512 49 18 517 3.36 535 50 18 478 3.63 496 51 21 459 4.38 480 52 24 455 5.01 479 53 19 449 4.06 468 54 26 471 5.23 497 55 12 465 2.52 477 56 17 456 3.59 473 57 20 484 3.97 504 58 18 434 3.98 452 59 15 433 3.35 448 60 12 451 2.59 463 61 12 437 2.67 449 62 15 423 3.42 438 63 17 379 4.29 396 64 14 414 3.27 428 65 12 383 3.04 395 66 14 407 3.33 421 67 11 402 2.66 413 68 14 382 3.54 396 69 11 368 2.90 379 70 11 389 2.75 400 71 13 382 3.29 395 72 6 356 1.66 362 73 9 345 2.54 354 74 8 360 2.17 368 75 8 338 2.31 346 76 11 338 3.15 349 77 5 320 1.54 325 78 14 301 4.44 315 79 7 239 2.85 246 80 1 127 0.78 128 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50 30 62.50 80 2 39 22 63.93 61 3 42 30 58.33 72 4 44 16 73.33 60 5 35 11 76.09 46 6 31 27 53.45 58 7 24 20 54.55 44 8 14 18 43.75 32 9 32 13 71.11 45 10 31 24 56.36 55 11 45 13 77.59 58 12 23 23 50.00 46 13 29 15 65.91 44 14 39 21 65.00 60 15 31 17 64.58 48 16 21 9 70.00 30 17 28 21 57.14 49 18 20 17 54.05 37 19 21 10 67.74 31 20 37 9 80.43 46 21 18 14 56.25 32 22 30 6 83.33 36 23 25 14 64.10 39 24 23 12 65.71 35 25 22 12 64.71 34 26 22 16 57.89 38 27 17 12 58.62 29 28 35 9 79.55 44 29 18 9 66.67 27 30 23 11 67.65 34 31 18 10 64.29 28 32 16 11 59.26 27 33 25 14 64.10 39 34 26 7 78.79 33 35 20 7 74.07 27 36 21 7 75.00 28 37 19 11 63.33 30 38 16 7 69.57 23 39 13 12 52.00 25 40 22 10 68.75 32 41 12 8 60.00 20 42 17 4 80.95 21 43 12 6 66.67 18 44 12 8 60.00 20 45 15 7 68.18 22 46 18 4 81.82 22 47 17 6 73.91 23 48 17 7 70.83 24 49 11 6 64.71 17 50 14 4 77.78 18 51 16 12 57.14 28 52 14 7 66.67 21 53 20 3 86.96 23 54 17 6 73.91 23 55 11 12 47.83 23 56 14 7 66.67 21 57 12 4 75.00 16 58 18 2 90.00 20 59 10 4 71.43 14 60 10 6 62.50 16 61 11 7 61.11 18 62 17 5 77.27 22 63 9 2 81.82 11 64 12 4 75.00 16 65 8 5 61.54 13 66 12 7 63.16 19 67 8 2 80.00 10 68 11 5 68.75 16 69 8 2 80.00 10 70 9 5 64.29 14 71 3 5 37.50 8 72 9 8 52.94 17 73 11 3 78.57 14 74 10 4 71.43 14 75 4 6 40.00 10 76 7 4 63.64 11 77 10 3 76.92 13 78 7 2 77.78 9 79 5 5 50.00 10 80 1 2 33.33 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 121 8.33 132 2 6 108 5.26 114 3 3 103 2.83 106 4 6 81 6.90 87 5 5 105 4.55 110 6 5 89 5.32 94 7 4 72 5.26 76 8 5 93 5.10 98 9 3 92 3.16 95 10 7 78 8.24 85 11 5 81 5.81 86 12 2 67 2.90 69 13 3 79 3.66 82 14 2 72 2.70 74 15 3 79 3.66 82 16 1 71 1.39 72 17 2 78 2.50 80 18 3 78 3.70 81 19 3 61 4.69 64 20 0 72 0.00 72 21 3 74 3.90 77 22 0 77 0.00 77 23 0 64 0.00 64 24 2 52 3.70 54 25 1 62 1.59 63 26 1 66 1.49 67 27 1 57 1.72 58 28 1 69 1.43 70 29 1 55 1.79 56 30 0 58 0.00 58 31 1 61 1.61 62 32 1 42 2.33 43 33 1 57 1.72 58 34 2 46 4.17 48 35 1 61 1.61 62 36 2 55 3.51 57 37 2 47 4.08 49 38 1 41 2.38 42 39 0 52 0.00 52 40 1 41 2.38 42 41 0 46 0.00 46 42 0 42 0.00 42 43 0 46 0.00 46 44 0 47 0.00 47 45 0 36 0.00 36 46 0 40 0.00 40 47 0 35 0.00 35 48 1 49 2.00 50 49 1 47 2.08 48 50 0 29 0.00 29 51 0 32 0.00 32 52 1 31 3.12 32 53 0 29 0.00 29 54 0 32 0.00 32 55 0 27 0.00 27 56 1 47 2.08 48 57 0 37 0.00 37 58 1 34 2.86 35 59 0 24 0.00 24 60 0 29 0.00 29 61 0 35 0.00 35 62 0 22 0.00 22 63 0 25 0.00 25 64 0 21 0.00 21 65 0 25 0.00 25 66 1 23 4.17 24 67 0 20 0.00 20 68 0 30 0.00 30 69 0 27 0.00 27 70 0 23 0.00 23 71 1 18 5.26 19 72 1 29 3.33 30 73 1 25 3.85 26 74 0 18 0.00 18 75 0 24 0.00 24 76 0 11 0.00 11 77 1 16 5.88 17 78 0 21 0.00 21 79 1 23 4.17 24 80 0 10 0.00 10 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38 391 8.86 429 2 39 334 10.46 373 3 18 302 5.62 320 4 14 289 4.62 303 5 15 284 5.02 299 6 19 280 6.35 299 7 5 297 1.66 302 8 13 269 4.61 282 9 13 269 4.61 282 10 15 250 5.66 265 11 12 241 4.74 253 12 9 232 3.73 241 13 6 236 2.48 242 14 9 244 3.56 253 15 11 215 4.87 226 16 11 204 5.12 215 17 7 232 2.93 239 18 7 246 2.77 253 19 5 237 2.07 242 20 11 208 5.02 219 21 8 211 3.65 219 22 7 217 3.12 224 23 9 187 4.59 196 24 5 181 2.69 186 25 6 202 2.88 208 26 4 201 1.95 205 27 2 190 1.04 192 28 4 175 2.23 179 29 3 179 1.65 182 30 2 164 1.20 166 31 5 199 2.45 204 32 4 148 2.63 152 33 2 159 1.24 161 34 2 168 1.18 170 35 1 176 0.56 177 36 3 170 1.73 173 37 3 137 2.14 140 38 4 152 2.56 156 39 2 130 1.52 132 40 1 138 0.72 139 41 1 140 0.71 141 42 2 121 1.63 123 43 3 133 2.21 136 44 3 140 2.10 143 45 4 135 2.88 139 46 1 126 0.79 127 47 1 128 0.78 129 48 1 128 0.78 129 49 4 102 3.77 106 50 0 97 0.00 97 51 1 104 0.95 105 52 3 118 2.48 121 53 3 127 2.31 130 54 0 101 0.00 101 55 3 112 2.61 115 56 1 104 0.95 105 57 3 85 3.41 88 58 1 109 0.91 110 59 2 103 1.90 105 60 1 109 0.91 110 61 3 92 3.16 95 62 2 84 2.33 86 63 1 83 1.19 84 64 2 72 2.70 74 65 0 78 0.00 78 66 0 97 0.00 97 67 1 83 1.19 84 68 3 73 3.95 76 69 1 77 1.28 78 70 1 75 1.32 76 71 0 72 0.00 72 72 1 73 1.35 74 73 1 69 1.43 70 74 1 61 1.61 62 75 2 55 3.51 57 76 2 65 2.99 67 77 2 52 3.70 54 78 1 54 1.82 55 79 1 40 2.44 41 80 0 33 0.00 33