/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_8_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_8_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
4760
Pairs without alignments under any condition
3417
Pairs that did not map uniquely
1823
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
121289
Methylated C's in CpG context
10022
Methylated C's in CHG context
670
Methylated C's in CHH context
4239
Methylated C's in Unknown context
372
Unmethylated C's in CpG context
4859
Unmethylated C's in CHG context
25468
Unmethylated C's in CHH context
76031
Unmethylated C's in Unknown context
1584
Percentage methylation (CpG context)
67.3%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
5.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1196
original top strand
CTOT
1200
complementary to original top strand
CTOB
1168
complementary to original bottom strand
OB
1196
original bottom strand
Deduplication
Alignments analysed
4760
Unique alignments
4760
Duplicates removed
0
Duplicated alignments were found at 0 different positions