zr2096_7_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5144 lines in total Total number of methylation call strings processed: 10288 Final Cytosine Methylation Report ================================= Total number of C's analysed: 91819 Total methylated C's in CpG context: 8022 Total methylated C's in CHG context: 528 Total methylated C's in CHH context: 2444 Total C to T conversions in CpG context: 3243 Total C to T conversions in CHG context: 19168 Total C to T conversions in CHH context: 58414 C methylated in CpG context: 71.2% C methylated in CHG context: 2.7% C methylated in CHH context: 4.0%