CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 73 45 61.86 118 2 80 47 62.99 127 3 87 38 69.60 125 4 71 43 62.28 114 5 75 37 66.96 112 6 78 34 69.64 112 7 89 24 78.76 113 8 78 43 64.46 121 9 88 31 73.95 119 10 95 35 73.08 130 11 87 32 73.11 119 12 91 41 68.94 132 13 91 35 72.22 126 14 96 40 70.59 136 15 77 33 70.00 110 16 80 23 77.67 103 17 92 36 71.88 128 18 77 43 64.17 120 19 79 30 72.48 109 20 87 35 71.31 122 21 74 32 69.81 106 22 95 31 75.40 126 23 82 42 66.13 124 24 99 33 75.00 132 25 80 37 68.38 117 26 84 36 70.00 120 27 95 24 79.83 119 28 97 27 78.23 124 29 70 37 65.42 107 30 91 42 68.42 133 31 81 28 74.31 109 32 104 40 72.22 144 33 95 31 75.40 126 34 81 33 71.05 114 35 90 30 75.00 120 36 92 33 73.60 125 37 81 37 68.64 118 38 94 31 75.20 125 39 76 35 68.47 111 40 84 36 70.00 120 41 85 29 74.56 114 42 93 27 77.50 120 43 76 27 73.79 103 44 76 30 71.70 106 45 80 29 73.39 109 46 88 32 73.33 120 47 84 34 71.19 118 48 86 31 73.50 117 49 82 34 70.69 116 50 74 23 76.29 97 51 74 30 71.15 104 52 73 17 81.11 90 53 100 28 78.12 128 54 71 20 78.02 91 55 83 21 79.81 104 56 84 22 79.25 106 57 67 14 82.72 81 58 71 27 72.45 98 59 66 30 68.75 96 60 72 27 72.73 99 61 75 23 76.53 98 62 58 25 69.88 83 63 63 28 69.23 91 64 75 31 70.75 106 65 68 28 70.83 96 66 79 28 73.83 107 67 66 17 79.52 83 68 66 34 66.00 100 69 64 30 68.09 94 70 70 19 78.65 89 71 66 23 74.16 89 72 49 22 69.01 71 73 40 24 62.50 64 74 54 19 73.97 73 75 65 14 82.28 79 76 52 19 73.24 71 77 44 17 72.13 61 78 49 19 72.06 68 79 33 15 68.75 48 80 26 10 72.22 36 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16 175 8.38 191 2 9 184 4.66 193 3 10 198 4.81 208 4 11 192 5.42 203 5 8 197 3.90 205 6 8 209 3.69 217 7 5 200 2.44 205 8 3 209 1.42 212 9 5 199 2.45 204 10 5 187 2.60 192 11 4 224 1.75 228 12 6 186 3.12 192 13 4 182 2.15 186 14 4 190 2.06 194 15 8 208 3.70 216 16 6 200 2.91 206 17 4 182 2.15 186 18 6 209 2.79 215 19 5 216 2.26 221 20 4 196 2.00 200 21 4 179 2.19 183 22 7 193 3.50 200 23 4 198 1.98 202 24 2 213 0.93 215 25 4 207 1.90 211 26 4 198 1.98 202 27 4 194 2.02 198 28 2 208 0.95 210 29 5 226 2.16 231 30 7 177 3.80 184 31 7 221 3.07 228 32 6 232 2.52 238 33 4 200 1.96 204 34 7 208 3.26 215 35 2 200 0.99 202 36 5 201 2.43 206 37 7 203 3.33 210 38 4 219 1.79 223 39 4 197 1.99 201 40 6 221 2.64 227 41 4 196 2.00 200 42 2 193 1.03 195 43 5 202 2.42 207 44 3 186 1.59 189 45 4 212 1.85 216 46 5 194 2.51 199 47 1 171 0.58 172 48 6 192 3.03 198 49 2 176 1.12 178 50 2 194 1.02 196 51 5 202 2.42 207 52 2 194 1.02 196 53 3 175 1.69 178 54 3 189 1.56 192 55 5 192 2.54 197 56 3 175 1.69 178 57 1 201 0.50 202 58 6 161 3.59 167 59 5 162 2.99 167 60 4 162 2.41 166 61 7 159 4.22 166 62 5 145 3.33 150 63 1 181 0.55 182 64 1 150 0.66 151 65 1 140 0.71 141 66 4 131 2.96 135 67 3 168 1.75 171 68 5 149 3.25 154 69 4 157 2.48 161 70 2 143 1.38 145 71 3 150 1.96 153 72 4 128 3.03 132 73 3 137 2.14 140 74 5 141 3.42 146 75 5 132 3.65 137 76 5 120 4.00 125 77 4 143 2.72 147 78 2 123 1.60 125 79 2 107 1.83 109 80 1 45 2.17 46 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47 583 7.46 630 2 48 626 7.12 674 3 38 635 5.65 673 4 37 570 6.10 607 5 31 581 5.07 612 6 30 595 4.80 625 7 34 558 5.74 592 8 33 583 5.36 616 9 39 555 6.57 594 10 34 569 5.64 603 11 49 592 7.64 641 12 32 587 5.17 619 13 35 602 5.49 637 14 37 585 5.95 622 15 47 586 7.42 633 16 40 551 6.77 591 17 35 567 5.81 602 18 37 612 5.70 649 19 32 635 4.80 667 20 39 607 6.04 646 21 31 651 4.55 682 22 38 597 5.98 635 23 20 603 3.21 623 24 38 614 5.83 652 25 24 647 3.58 671 26 37 595 5.85 632 27 34 611 5.27 645 28 35 605 5.47 640 29 29 604 4.58 633 30 38 598 5.97 636 31 25 593 4.05 618 32 27 587 4.40 614 33 34 602 5.35 636 34 30 610 4.69 640 35 30 612 4.67 642 36 29 597 4.63 626 37 19 609 3.03 628 38 33 608 5.15 641 39 27 603 4.29 630 40 26 572 4.35 598 41 21 582 3.48 603 42 20 570 3.39 590 43 26 593 4.20 619 44 24 539 4.26 563 45 28 583 4.58 611 46 16 612 2.55 628 47 19 560 3.28 579 48 15 583 2.51 598 49 20 549 3.51 569 50 18 559 3.12 577 51 21 537 3.76 558 52 20 543 3.55 563 53 10 564 1.74 574 54 13 548 2.32 561 55 11 527 2.04 538 56 15 522 2.79 537 57 16 543 2.86 559 58 12 551 2.13 563 59 13 546 2.33 559 60 19 519 3.53 538 61 14 487 2.79 501 62 14 475 2.86 489 63 18 477 3.64 495 64 17 475 3.46 492 65 5 464 1.07 469 66 18 453 3.82 471 67 15 433 3.35 448 68 17 461 3.56 478 69 16 451 3.43 467 70 4 447 0.89 451 71 8 460 1.71 468 72 10 460 2.13 470 73 7 421 1.64 428 74 12 454 2.58 466 75 6 440 1.35 446 76 7 420 1.64 427 77 11 407 2.63 418 78 5 363 1.36 368 79 10 262 3.68 272 80 3 123 2.38 126 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57 25 69.51 82 2 62 26 70.45 88 3 42 20 67.74 62 4 39 42 48.15 81 5 38 17 69.09 55 6 39 24 61.90 63 7 36 29 55.38 65 8 36 24 60.00 60 9 22 21 51.16 43 10 33 23 58.93 56 11 34 20 62.96 54 12 43 18 70.49 61 13 32 16 66.67 48 14 22 18 55.00 40 15 41 7 85.42 48 16 35 9 79.55 44 17 30 8 78.95 38 18 38 14 73.08 52 19 44 13 77.19 57 20 29 16 64.44 45 21 30 15 66.67 45 22 32 16 66.67 48 23 29 14 67.44 43 24 26 10 72.22 36 25 33 16 67.35 49 26 29 10 74.36 39 27 27 9 75.00 36 28 30 13 69.77 43 29 30 10 75.00 40 30 32 16 66.67 48 31 31 7 81.58 38 32 24 13 64.86 37 33 27 8 77.14 35 34 25 8 75.76 33 35 31 7 81.58 38 36 25 13 65.79 38 37 24 5 82.76 29 38 19 16 54.29 35 39 12 9 57.14 21 40 22 8 73.33 30 41 30 8 78.95 38 42 30 8 78.95 38 43 22 9 70.97 31 44 23 6 79.31 29 45 24 3 88.89 27 46 19 8 70.37 27 47 16 7 69.57 23 48 20 12 62.50 32 49 22 11 66.67 33 50 21 11 65.62 32 51 17 6 73.91 23 52 23 8 74.19 31 53 21 5 80.77 26 54 14 9 60.87 23 55 14 4 77.78 18 56 14 9 60.87 23 57 14 5 73.68 19 58 10 4 71.43 14 59 16 12 57.14 28 60 15 3 83.33 18 61 13 5 72.22 18 62 14 6 70.00 20 63 7 9 43.75 16 64 8 4 66.67 12 65 7 5 58.33 12 66 10 6 62.50 16 67 13 4 76.47 17 68 10 9 52.63 19 69 5 3 62.50 8 70 10 7 58.82 17 71 8 1 88.89 9 72 14 4 77.78 18 73 13 6 68.42 19 74 6 4 60.00 10 75 8 5 61.54 13 76 7 6 53.85 13 77 14 6 70.00 20 78 11 6 64.71 17 79 4 4 50.00 8 80 2 5 28.57 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 160 6.98 172 2 9 114 7.32 123 3 10 114 8.06 124 4 4 102 3.77 106 5 7 92 7.07 99 6 6 96 5.88 102 7 3 107 2.73 110 8 2 98 2.00 100 9 3 88 3.30 91 10 4 97 3.96 101 11 8 103 7.21 111 12 3 98 2.97 101 13 1 100 0.99 101 14 4 93 4.12 97 15 5 90 5.26 95 16 4 92 4.17 96 17 2 79 2.47 81 18 0 94 0.00 94 19 2 74 2.63 76 20 4 84 4.55 88 21 1 68 1.45 69 22 3 78 3.70 81 23 7 77 8.33 84 24 0 77 0.00 77 25 1 76 1.30 77 26 2 65 2.99 67 27 1 59 1.67 60 28 0 70 0.00 70 29 2 77 2.53 79 30 0 61 0.00 61 31 1 65 1.52 66 32 5 51 8.93 56 33 0 56 0.00 56 34 0 72 0.00 72 35 3 81 3.57 84 36 0 55 0.00 55 37 1 55 1.79 56 38 2 51 3.77 53 39 0 49 0.00 49 40 4 46 8.00 50 41 3 68 4.23 71 42 1 44 2.22 45 43 1 47 2.08 48 44 0 41 0.00 41 45 3 52 5.45 55 46 2 55 3.51 57 47 2 46 4.17 48 48 0 34 0.00 34 49 1 50 1.96 51 50 3 45 6.25 48 51 0 34 0.00 34 52 0 42 0.00 42 53 1 36 2.70 37 54 0 34 0.00 34 55 2 43 4.44 45 56 3 34 8.11 37 57 2 56 3.45 58 58 0 36 0.00 36 59 0 34 0.00 34 60 2 25 7.41 27 61 1 42 2.33 43 62 2 32 5.88 34 63 0 26 0.00 26 64 2 32 5.88 34 65 1 37 2.63 38 66 0 24 0.00 24 67 0 33 0.00 33 68 2 28 6.67 30 69 0 28 0.00 28 70 0 25 0.00 25 71 0 25 0.00 25 72 1 25 3.85 26 73 0 33 0.00 33 74 0 14 0.00 14 75 0 27 0.00 27 76 2 22 8.33 24 77 0 26 0.00 26 78 0 19 0.00 19 79 1 22 4.35 23 80 0 12 0.00 12 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40 453 8.11 493 2 38 386 8.96 424 3 18 382 4.50 400 4 12 365 3.18 377 5 19 315 5.69 334 6 16 346 4.42 362 7 15 332 4.32 347 8 15 323 4.44 338 9 15 335 4.29 350 10 21 296 6.62 317 11 14 268 4.96 282 12 12 295 3.91 307 13 9 265 3.28 274 14 11 258 4.09 269 15 6 274 2.14 280 16 13 285 4.36 298 17 9 281 3.10 290 18 7 275 2.48 282 19 17 281 5.70 298 20 6 256 2.29 262 21 5 256 1.92 261 22 10 249 3.86 259 23 3 225 1.32 228 24 8 269 2.89 277 25 10 199 4.78 209 26 5 246 1.99 251 27 6 214 2.73 220 28 10 198 4.81 208 29 11 194 5.37 205 30 5 200 2.44 205 31 5 220 2.22 225 32 3 211 1.40 214 33 7 194 3.48 201 34 3 192 1.54 195 35 3 184 1.60 187 36 2 203 0.98 205 37 3 175 1.69 178 38 3 177 1.67 180 39 6 180 3.23 186 40 2 174 1.14 176 41 2 172 1.15 174 42 4 154 2.53 158 43 3 169 1.74 172 44 4 166 2.35 170 45 2 162 1.22 164 46 1 146 0.68 147 47 6 151 3.82 157 48 3 156 1.89 159 49 5 145 3.33 150 50 1 142 0.70 143 51 4 163 2.40 167 52 4 131 2.96 135 53 1 128 0.78 129 54 2 125 1.57 127 55 2 105 1.87 107 56 2 118 1.67 120 57 1 113 0.88 114 58 1 121 0.82 122 59 3 119 2.46 122 60 5 134 3.60 139 61 2 105 1.87 107 62 2 97 2.02 99 63 2 122 1.61 124 64 3 107 2.73 110 65 2 115 1.71 117 66 2 101 1.94 103 67 1 89 1.11 90 68 1 100 0.99 101 69 2 89 2.20 91 70 3 91 3.19 94 71 1 86 1.15 87 72 1 89 1.11 90 73 1 74 1.33 75 74 1 73 1.35 74 75 2 78 2.50 80 76 3 72 4.00 75 77 1 56 1.75 57 78 1 63 1.56 64 79 2 56 3.45 58 80 0 40 0.00 40