/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5144
Pairs without alignments under any condition
2966
Pairs that did not map uniquely
1890
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
137359
Methylated C's in CpG context
12194
Methylated C's in CHG context
769
Methylated C's in CHH context
3871
Methylated C's in Unknown context
341
Unmethylated C's in CpG context
4779
Unmethylated C's in CHG context
28789
Unmethylated C's in CHH context
86957
Unmethylated C's in Unknown context
1790
Percentage methylation (CpG context)
71.8%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
4.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1297
original top strand
CTOT
1237
complementary to original top strand
CTOB
1285
complementary to original bottom strand
OB
1325
original bottom strand
Deduplication
Alignments analysed
5144
Unique alignments
5144
Duplicates removed
0
Duplicated alignments were found at 0 different positions