CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 77 29 72.64 106 2 102 39 72.34 141 3 99 38 72.26 137 4 92 30 75.41 122 5 83 39 68.03 122 6 101 36 73.72 137 7 89 34 72.36 123 8 94 30 75.81 124 9 92 31 74.80 123 10 95 38 71.43 133 11 78 35 69.03 113 12 108 30 78.26 138 13 91 52 63.64 143 14 88 47 65.19 135 15 92 32 74.19 124 16 96 24 80.00 120 17 87 42 67.44 129 18 109 35 75.69 144 19 105 30 77.78 135 20 104 30 77.61 134 21 108 28 79.41 136 22 110 37 74.83 147 23 88 34 72.13 122 24 103 34 75.18 137 25 101 32 75.94 133 26 95 37 71.97 132 27 100 35 74.07 135 28 87 32 73.11 119 29 117 43 73.12 160 30 106 27 79.70 133 31 96 37 72.18 133 32 85 39 68.55 124 33 89 28 76.07 117 34 93 30 75.61 123 35 97 29 76.98 126 36 99 39 71.74 138 37 108 26 80.60 134 38 103 33 75.74 136 39 102 25 80.31 127 40 90 27 76.92 117 41 93 22 80.87 115 42 89 41 68.46 130 43 100 39 71.94 139 44 97 29 76.98 126 45 102 34 75.00 136 46 78 24 76.47 102 47 93 32 74.40 125 48 89 30 74.79 119 49 70 20 77.78 90 50 97 39 71.32 136 51 89 32 73.55 121 52 78 29 72.90 107 53 87 32 73.11 119 54 77 25 75.49 102 55 80 33 70.80 113 56 85 22 79.44 107 57 75 34 68.81 109 58 60 30 66.67 90 59 88 18 83.02 106 60 73 27 73.00 100 61 81 21 79.41 102 62 53 24 68.83 77 63 62 28 68.89 90 64 77 28 73.33 105 65 67 24 73.63 91 66 69 20 77.53 89 67 54 19 73.97 73 68 57 19 75.00 76 69 71 25 73.96 96 70 65 26 71.43 91 71 71 33 68.27 104 72 65 25 72.22 90 73 59 26 69.41 85 74 57 31 64.77 88 75 48 16 75.00 64 76 61 17 78.21 78 77 45 22 67.16 67 78 47 17 73.44 64 79 26 14 65.00 40 80 19 3 86.36 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 22 193 10.23 215 2 16 172 8.51 188 3 7 203 3.33 210 4 8 219 3.52 227 5 5 199 2.45 204 6 6 192 3.03 198 7 3 217 1.36 220 8 6 195 2.99 201 9 7 189 3.57 196 10 11 197 5.29 208 11 2 199 1.00 201 12 8 194 3.96 202 13 5 225 2.17 230 14 4 215 1.83 219 15 5 191 2.55 196 16 4 196 2.00 200 17 2 236 0.84 238 18 5 200 2.44 205 19 9 214 4.04 223 20 5 215 2.27 220 21 1 215 0.46 216 22 4 216 1.82 220 23 4 205 1.91 209 24 2 211 0.94 213 25 3 207 1.43 210 26 4 239 1.65 243 27 7 222 3.06 229 28 4 208 1.89 212 29 2 207 0.96 209 30 7 229 2.97 236 31 5 228 2.15 233 32 6 217 2.69 223 33 3 204 1.45 207 34 2 221 0.90 223 35 7 209 3.24 216 36 3 192 1.54 195 37 4 202 1.94 206 38 3 201 1.47 204 39 3 188 1.57 191 40 5 210 2.33 215 41 2 202 0.98 204 42 3 211 1.40 214 43 6 203 2.87 209 44 2 190 1.04 192 45 2 191 1.04 193 46 1 215 0.46 216 47 1 197 0.51 198 48 6 167 3.47 173 49 4 206 1.90 210 50 5 171 2.84 176 51 4 198 1.98 202 52 3 181 1.63 184 53 5 208 2.35 213 54 2 146 1.35 148 55 4 171 2.29 175 56 1 180 0.55 181 57 4 168 2.33 172 58 1 138 0.72 139 59 0 173 0.00 173 60 1 173 0.57 174 61 3 142 2.07 145 62 3 165 1.79 168 63 7 141 4.73 148 64 2 134 1.47 136 65 2 144 1.37 146 66 2 145 1.36 147 67 1 135 0.74 136 68 0 128 0.00 128 69 2 149 1.32 151 70 1 114 0.87 115 71 4 135 2.88 139 72 6 118 4.84 124 73 1 120 0.83 121 74 2 124 1.59 126 75 2 122 1.61 124 76 2 113 1.74 115 77 2 101 1.94 103 78 4 97 3.96 101 79 1 82 1.20 83 80 0 35 0.00 35 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 50 603 7.66 653 2 46 625 6.86 671 3 39 626 5.86 665 4 47 573 7.58 620 5 39 601 6.09 640 6 40 552 6.76 592 7 38 562 6.33 600 8 47 551 7.86 598 9 33 583 5.36 616 10 37 574 6.06 611 11 41 574 6.67 615 12 35 587 5.63 622 13 37 602 5.79 639 14 37 615 5.67 652 15 31 599 4.92 630 16 37 607 5.75 644 17 31 593 4.97 624 18 41 603 6.37 644 19 38 621 5.77 659 20 30 603 4.74 633 21 34 643 5.02 677 22 42 567 6.90 609 23 32 648 4.71 680 24 29 632 4.39 661 25 34 653 4.95 687 26 35 563 5.85 598 27 35 626 5.30 661 28 27 638 4.06 665 29 28 597 4.48 625 30 33 627 5.00 660 31 38 647 5.55 685 32 25 642 3.75 667 33 32 641 4.75 673 34 31 618 4.78 649 35 31 596 4.94 627 36 28 612 4.38 640 37 32 567 5.34 599 38 26 593 4.20 619 39 16 599 2.60 615 40 23 577 3.83 600 41 24 608 3.80 632 42 14 605 2.26 619 43 22 593 3.58 615 44 23 570 3.88 593 45 18 545 3.20 563 46 22 570 3.72 592 47 26 567 4.38 593 48 15 593 2.47 608 49 19 562 3.27 581 50 22 544 3.89 566 51 15 511 2.85 526 52 14 537 2.54 551 53 15 489 2.98 504 54 14 536 2.55 550 55 13 499 2.54 512 56 16 507 3.06 523 57 16 496 3.12 512 58 15 469 3.10 484 59 8 484 1.63 492 60 13 499 2.54 512 61 7 482 1.43 489 62 9 429 2.05 438 63 10 475 2.06 485 64 11 438 2.45 449 65 14 431 3.15 445 66 12 429 2.72 441 67 12 420 2.78 432 68 9 423 2.08 432 69 14 395 3.42 409 70 9 391 2.25 400 71 9 386 2.28 395 72 7 345 1.99 352 73 9 334 2.62 343 74 8 343 2.28 351 75 9 352 2.49 361 76 3 347 0.86 350 77 15 301 4.75 316 78 11 283 3.74 294 79 4 255 1.54 259 80 5 138 3.50 143 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56 33 62.92 89 2 51 29 63.75 80 3 55 20 73.33 75 4 39 26 60.00 65 5 33 14 70.21 47 6 27 19 58.70 46 7 27 11 71.05 38 8 52 18 74.29 70 9 38 17 69.09 55 10 34 13 72.34 47 11 42 19 68.85 61 12 35 18 66.04 53 13 24 22 52.17 46 14 34 15 69.39 49 15 52 21 71.23 73 16 34 11 75.56 45 17 36 20 64.29 56 18 38 15 71.70 53 19 22 11 66.67 33 20 26 13 66.67 39 21 29 13 69.05 42 22 28 8 77.78 36 23 29 11 72.50 40 24 23 8 74.19 31 25 31 13 70.45 44 26 19 12 61.29 31 27 17 9 65.38 26 28 36 10 78.26 46 29 22 8 73.33 30 30 14 5 73.68 19 31 18 12 60.00 30 32 20 8 71.43 28 33 23 9 71.88 32 34 22 9 70.97 31 35 22 2 91.67 24 36 24 7 77.42 31 37 23 7 76.67 30 38 24 6 80.00 30 39 18 6 75.00 24 40 27 7 79.41 34 41 17 4 80.95 21 42 12 6 66.67 18 43 13 8 61.90 21 44 25 2 92.59 27 45 25 8 75.76 33 46 17 4 80.95 21 47 17 5 77.27 22 48 10 4 71.43 14 49 19 11 63.33 30 50 19 7 73.08 26 51 8 4 66.67 12 52 25 4 86.21 29 53 12 2 85.71 14 54 8 5 61.54 13 55 17 5 77.27 22 56 18 5 78.26 23 57 9 2 81.82 11 58 12 8 60.00 20 59 7 2 77.78 9 60 8 3 72.73 11 61 12 2 85.71 14 62 5 4 55.56 9 63 4 0 100.00 4 64 9 2 81.82 11 65 7 1 87.50 8 66 7 1 87.50 8 67 9 5 64.29 14 68 7 3 70.00 10 69 10 2 83.33 12 70 11 0 100.00 11 71 13 1 92.86 14 72 3 3 50.00 6 73 6 2 75.00 8 74 6 1 85.71 7 75 5 2 71.43 7 76 6 0 100.00 6 77 3 1 75.00 4 78 3 5 37.50 8 79 4 3 57.14 7 80 7 0 100.00 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16 138 10.39 154 2 9 119 7.03 128 3 5 120 4.00 125 4 6 106 5.36 112 5 3 99 2.94 102 6 3 84 3.45 87 7 2 97 2.02 99 8 3 81 3.57 84 9 1 88 1.12 89 10 2 96 2.04 98 11 3 74 3.90 77 12 2 91 2.15 93 13 4 81 4.71 85 14 1 70 1.41 71 15 2 79 2.47 81 16 1 77 1.28 78 17 1 67 1.47 68 18 2 63 3.08 65 19 1 59 1.67 60 20 0 68 0.00 68 21 1 47 2.08 48 22 1 52 1.89 53 23 3 80 3.61 83 24 1 53 1.85 54 25 1 63 1.56 64 26 2 72 2.70 74 27 1 45 2.17 46 28 1 55 1.79 56 29 4 66 5.71 70 30 2 54 3.57 56 31 0 44 0.00 44 32 2 39 4.88 41 33 2 50 3.85 52 34 1 42 2.33 43 35 1 39 2.50 40 36 0 34 0.00 34 37 0 49 0.00 49 38 1 46 2.13 47 39 1 44 2.22 45 40 1 42 2.33 43 41 2 33 5.71 35 42 0 35 0.00 35 43 0 38 0.00 38 44 0 38 0.00 38 45 0 37 0.00 37 46 2 40 4.76 42 47 0 35 0.00 35 48 0 31 0.00 31 49 1 28 3.45 29 50 0 33 0.00 33 51 0 45 0.00 45 52 0 37 0.00 37 53 0 26 0.00 26 54 0 27 0.00 27 55 0 21 0.00 21 56 1 22 4.35 23 57 0 32 0.00 32 58 1 26 3.70 27 59 0 21 0.00 21 60 1 34 2.86 35 61 0 22 0.00 22 62 1 22 4.35 23 63 0 20 0.00 20 64 0 22 0.00 22 65 0 24 0.00 24 66 0 24 0.00 24 67 0 20 0.00 20 68 0 18 0.00 18 69 1 19 5.00 20 70 0 18 0.00 18 71 0 17 0.00 17 72 0 19 0.00 19 73 0 19 0.00 19 74 2 9 18.18 11 75 0 23 0.00 23 76 0 11 0.00 11 77 1 14 6.67 15 78 0 13 0.00 13 79 0 14 0.00 14 80 0 9 0.00 9 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40 488 7.58 528 2 30 341 8.09 371 3 25 344 6.78 369 4 11 301 3.53 312 5 10 300 3.23 310 6 19 277 6.42 296 7 5 260 1.89 265 8 10 271 3.56 281 9 13 235 5.24 248 10 15 265 5.36 280 11 9 241 3.60 250 12 10 220 4.35 230 13 8 242 3.20 250 14 13 197 6.19 210 15 4 210 1.87 214 16 10 217 4.41 227 17 7 219 3.10 226 18 10 192 4.95 202 19 5 217 2.25 222 20 6 197 2.96 203 21 11 192 5.42 203 22 7 188 3.59 195 23 6 188 3.09 194 24 5 204 2.39 209 25 5 195 2.50 200 26 4 180 2.17 184 27 0 183 0.00 183 28 5 170 2.86 175 29 3 167 1.76 170 30 3 169 1.74 172 31 3 196 1.51 199 32 5 165 2.94 170 33 5 153 3.16 158 34 2 136 1.45 138 35 3 124 2.36 127 36 4 174 2.25 178 37 2 137 1.44 139 38 5 136 3.55 141 39 2 122 1.61 124 40 3 126 2.33 129 41 2 122 1.61 124 42 2 137 1.44 139 43 1 112 0.88 113 44 5 99 4.81 104 45 3 105 2.78 108 46 1 113 0.88 114 47 1 110 0.90 111 48 0 114 0.00 114 49 1 104 0.95 105 50 2 104 1.89 106 51 1 90 1.10 91 52 0 103 0.00 103 53 0 95 0.00 95 54 2 91 2.15 93 55 1 86 1.15 87 56 0 80 0.00 80 57 0 85 0.00 85 58 1 76 1.30 77 59 0 89 0.00 89 60 1 82 1.20 83 61 2 81 2.41 83 62 0 70 0.00 70 63 0 84 0.00 84 64 0 78 0.00 78 65 1 76 1.30 77 66 0 69 0.00 69 67 0 60 0.00 60 68 0 72 0.00 72 69 0 58 0.00 58 70 0 50 0.00 50 71 0 53 0.00 53 72 0 68 0.00 68 73 0 55 0.00 55 74 1 55 1.79 56 75 1 46 2.13 47 76 4 57 6.56 61 77 1 50 1.96 51 78 1 40 2.44 41 79 1 43 2.27 44 80 0 28 0.00 28