/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_6_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_6_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5375
Pairs without alignments under any condition
2366
Pairs that did not map uniquely
2259
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
136772
Methylated C's in CpG context
13402
Methylated C's in CHG context
637
Methylated C's in CHH context
3820
Methylated C's in Unknown context
341
Unmethylated C's in CpG context
4827
Unmethylated C's in CHG context
28977
Unmethylated C's in CHH context
85109
Unmethylated C's in Unknown context
1800
Percentage methylation (CpG context)
73.5%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
4.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1444
original top strand
CTOT
1228
complementary to original top strand
CTOB
1259
complementary to original bottom strand
OB
1444
original bottom strand
Deduplication
Alignments analysed
5375
Unique alignments
5375
Duplicates removed
0
Duplicated alignments were found at 0 different positions