zr2096_4_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5293 lines in total Total number of methylation call strings processed: 10586 Final Cytosine Methylation Report ================================= Total number of C's analysed: 85446 Total methylated C's in CpG context: 7365 Total methylated C's in CHG context: 454 Total methylated C's in CHH context: 2475 Total C to T conversions in CpG context: 3497 Total C to T conversions in CHG context: 17953 Total C to T conversions in CHH context: 53702 C methylated in CpG context: 67.8% C methylated in CHG context: 2.5% C methylated in CHH context: 4.4%