CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 68 38 64.15 106 2 100 44 69.44 144 3 80 39 67.23 119 4 81 44 64.80 125 5 76 50 60.32 126 6 77 46 62.60 123 7 83 40 67.48 123 8 79 26 75.24 105 9 70 45 60.87 115 10 79 43 64.75 122 11 83 40 67.48 123 12 83 39 68.03 122 13 83 29 74.11 112 14 87 49 63.97 136 15 87 38 69.60 125 16 73 26 73.74 99 17 83 45 64.84 128 18 75 40 65.22 115 19 86 44 66.15 130 20 85 33 72.03 118 21 86 39 68.80 125 22 87 40 68.50 127 23 79 26 75.24 105 24 95 38 71.43 133 25 101 45 69.18 146 26 85 42 66.93 127 27 76 42 64.41 118 28 104 37 73.76 141 29 80 35 69.57 115 30 79 42 65.29 121 31 81 43 65.32 124 32 83 42 66.40 125 33 76 34 69.09 110 34 100 46 68.49 146 35 82 33 71.30 115 36 103 29 78.03 132 37 79 35 69.30 114 38 90 32 73.77 122 39 84 37 69.42 121 40 87 41 67.97 128 41 80 32 71.43 112 42 90 32 73.77 122 43 89 44 66.92 133 44 80 40 66.67 120 45 70 39 64.22 109 46 87 34 71.90 121 47 65 30 68.42 95 48 91 34 72.80 125 49 56 38 59.57 94 50 60 38 61.22 98 51 71 41 63.39 112 52 72 30 70.59 102 53 77 26 74.76 103 54 61 26 70.11 87 55 65 29 69.15 94 56 67 29 69.79 96 57 64 32 66.67 96 58 61 22 73.49 83 59 61 35 63.54 96 60 70 39 64.22 109 61 71 36 66.36 107 62 54 32 62.79 86 63 73 24 75.26 97 64 55 26 67.90 81 65 67 26 72.04 93 66 54 35 60.67 89 67 73 21 77.66 94 68 66 26 71.74 92 69 46 21 68.66 67 70 52 29 64.20 81 71 39 29 57.35 68 72 54 25 68.35 79 73 60 23 72.29 83 74 51 23 68.92 74 75 38 24 61.29 62 76 42 21 66.67 63 77 66 24 73.33 90 78 34 15 69.39 49 79 32 14 69.57 46 80 15 4 78.95 19 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 17 176 8.81 193 2 7 198 3.41 205 3 11 223 4.70 234 4 5 202 2.42 207 5 8 189 4.06 197 6 12 196 5.77 208 7 7 213 3.18 220 8 7 211 3.21 218 9 4 184 2.13 188 10 3 201 1.47 204 11 4 199 1.97 203 12 6 207 2.82 213 13 8 187 4.10 195 14 9 204 4.23 213 15 4 201 1.95 205 16 5 203 2.40 208 17 6 210 2.78 216 18 5 191 2.55 196 19 10 206 4.63 216 20 1 182 0.55 183 21 5 212 2.30 217 22 5 201 2.43 206 23 7 205 3.30 212 24 7 211 3.21 218 25 5 203 2.40 208 26 5 203 2.40 208 27 3 212 1.40 215 28 3 208 1.42 211 29 5 207 2.36 212 30 4 224 1.75 228 31 3 201 1.47 204 32 3 201 1.47 204 33 2 203 0.98 205 34 6 198 2.94 204 35 4 204 1.92 208 36 5 193 2.53 198 37 4 195 2.01 199 38 5 184 2.65 189 39 2 218 0.91 220 40 1 202 0.49 203 41 7 205 3.30 212 42 5 184 2.65 189 43 4 193 2.03 197 44 5 186 2.62 191 45 3 180 1.64 183 46 4 180 2.17 184 47 4 198 1.98 202 48 4 162 2.41 166 49 4 159 2.45 163 50 2 160 1.23 162 51 1 173 0.57 174 52 3 174 1.69 177 53 4 160 2.44 164 54 1 166 0.60 167 55 4 157 2.48 161 56 6 189 3.08 195 57 4 147 2.65 151 58 0 177 0.00 177 59 2 162 1.22 164 60 2 148 1.33 150 61 5 154 3.14 159 62 1 145 0.68 146 63 8 154 4.94 162 64 1 146 0.68 147 65 0 144 0.00 144 66 1 127 0.78 128 67 1 129 0.77 130 68 2 125 1.57 127 69 6 166 3.49 172 70 2 118 1.67 120 71 2 148 1.33 150 72 0 124 0.00 124 73 3 118 2.48 121 74 2 136 1.45 138 75 5 125 3.85 130 76 3 128 2.29 131 77 4 106 3.64 110 78 1 103 0.96 104 79 3 72 4.00 75 80 0 40 0.00 40 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 50 627 7.39 677 2 60 597 9.13 657 3 36 655 5.21 691 4 49 559 8.06 608 5 44 609 6.74 653 6 50 547 8.38 597 7 43 563 7.10 606 8 40 543 6.86 583 9 41 551 6.93 592 10 47 573 7.58 620 11 36 524 6.43 560 12 34 562 5.70 596 13 39 527 6.89 566 14 40 539 6.91 579 15 46 587 7.27 633 16 44 610 6.73 654 17 27 622 4.16 649 18 42 638 6.18 680 19 42 641 6.15 683 20 40 580 6.45 620 21 28 582 4.59 610 22 31 585 5.03 616 23 33 636 4.93 669 24 36 642 5.31 678 25 28 616 4.35 644 26 34 624 5.17 658 27 33 643 4.88 676 28 37 612 5.70 649 29 27 650 3.99 677 30 32 606 5.02 638 31 41 597 6.43 638 32 25 594 4.04 619 33 39 626 5.86 665 34 25 641 3.75 666 35 31 632 4.68 663 36 32 649 4.70 681 37 25 598 4.01 623 38 34 579 5.55 613 39 27 596 4.33 623 40 24 574 4.01 598 41 27 587 4.40 614 42 16 602 2.59 618 43 32 588 5.16 620 44 23 582 3.80 605 45 20 556 3.47 576 46 19 582 3.16 601 47 19 517 3.54 536 48 24 530 4.33 554 49 18 552 3.16 570 50 24 511 4.49 535 51 17 517 3.18 534 52 17 508 3.24 525 53 13 521 2.43 534 54 17 526 3.13 543 55 11 524 2.06 535 56 10 452 2.16 462 57 19 443 4.11 462 58 16 472 3.28 488 59 13 436 2.90 449 60 14 458 2.97 472 61 14 453 3.00 467 62 17 416 3.93 433 63 9 439 2.01 448 64 9 419 2.10 428 65 7 425 1.62 432 66 12 421 2.77 433 67 10 412 2.37 422 68 11 425 2.52 436 69 6 381 1.55 387 70 12 408 2.86 420 71 8 396 1.98 404 72 6 377 1.57 383 73 8 373 2.10 381 74 15 370 3.90 385 75 10 336 2.89 346 76 6 355 1.66 361 77 7 356 1.93 363 78 11 323 3.29 334 79 4 257 1.53 261 80 5 123 3.91 128 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 61 27 69.32 88 2 58 36 61.70 94 3 47 24 66.20 71 4 37 31 54.41 68 5 41 24 63.08 65 6 27 11 71.05 38 7 33 28 54.10 61 8 32 18 64.00 50 9 33 14 70.21 47 10 34 22 60.71 56 11 31 22 58.49 53 12 37 17 68.52 54 13 37 18 67.27 55 14 36 17 67.92 53 15 32 22 59.26 54 16 28 19 59.57 47 17 32 17 65.31 49 18 21 14 60.00 35 19 31 11 73.81 42 20 26 11 70.27 37 21 24 7 77.42 31 22 23 10 69.70 33 23 25 10 71.43 35 24 14 18 43.75 32 25 27 17 61.36 44 26 26 11 70.27 37 27 26 13 66.67 39 28 26 9 74.29 35 29 18 8 69.23 26 30 17 9 65.38 26 31 21 8 72.41 29 32 20 11 64.52 31 33 26 11 70.27 37 34 21 8 72.41 29 35 22 4 84.62 26 36 14 7 66.67 21 37 26 8 76.47 34 38 15 7 68.18 22 39 18 11 62.07 29 40 19 11 63.33 30 41 12 8 60.00 20 42 17 9 65.38 26 43 17 8 68.00 25 44 14 8 63.64 22 45 13 3 81.25 16 46 16 11 59.26 27 47 20 8 71.43 28 48 10 11 47.62 21 49 13 4 76.47 17 50 10 7 58.82 17 51 9 4 69.23 13 52 7 4 63.64 11 53 8 2 80.00 10 54 14 3 82.35 17 55 8 2 80.00 10 56 14 11 56.00 25 57 12 6 66.67 18 58 13 3 81.25 16 59 9 3 75.00 12 60 13 4 76.47 17 61 9 5 64.29 14 62 4 5 44.44 9 63 7 2 77.78 9 64 9 6 60.00 15 65 10 6 62.50 16 66 6 3 66.67 9 67 6 6 50.00 12 68 12 1 92.31 13 69 9 2 81.82 11 70 3 3 50.00 6 71 10 4 71.43 14 72 15 5 75.00 20 73 7 1 87.50 8 74 7 3 70.00 10 75 2 4 33.33 6 76 5 4 55.56 9 77 8 3 72.73 11 78 7 2 77.78 9 79 3 4 42.86 7 80 1 4 20.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19 137 12.18 156 2 4 104 3.70 108 3 9 104 7.96 113 4 5 111 4.31 116 5 5 92 5.15 97 6 3 83 3.49 86 7 2 78 2.50 80 8 5 110 4.35 115 9 2 110 1.79 112 10 1 84 1.18 85 11 1 87 1.14 88 12 4 85 4.49 89 13 3 76 3.80 79 14 1 91 1.09 92 15 2 87 2.25 89 16 3 67 4.29 70 17 0 63 0.00 63 18 1 59 1.67 60 19 2 96 2.04 98 20 4 62 6.06 66 21 0 62 0.00 62 22 0 76 0.00 76 23 0 39 0.00 39 24 1 76 1.30 77 25 1 61 1.61 62 26 0 68 0.00 68 27 1 61 1.61 62 28 2 53 3.64 55 29 1 63 1.56 64 30 2 63 3.08 65 31 2 61 3.17 63 32 0 44 0.00 44 33 0 52 0.00 52 34 3 56 5.08 59 35 1 58 1.69 59 36 1 44 2.22 45 37 0 43 0.00 43 38 1 46 2.13 47 39 1 57 1.72 58 40 1 48 2.04 49 41 0 46 0.00 46 42 1 36 2.70 37 43 1 43 2.27 44 44 0 47 0.00 47 45 1 42 2.33 43 46 1 29 3.33 30 47 1 36 2.70 37 48 2 47 4.08 49 49 0 38 0.00 38 50 0 29 0.00 29 51 0 30 0.00 30 52 0 24 0.00 24 53 1 25 3.85 26 54 0 30 0.00 30 55 1 28 3.45 29 56 0 22 0.00 22 57 0 35 0.00 35 58 1 26 3.70 27 59 0 30 0.00 30 60 1 17 5.56 18 61 0 27 0.00 27 62 1 21 4.55 22 63 0 18 0.00 18 64 1 16 5.88 17 65 0 25 0.00 25 66 1 18 5.26 19 67 0 20 0.00 20 68 1 24 4.00 25 69 0 12 0.00 12 70 0 18 0.00 18 71 0 18 0.00 18 72 0 15 0.00 15 73 1 14 6.67 15 74 0 26 0.00 26 75 0 8 0.00 8 76 1 10 9.09 11 77 0 17 0.00 17 78 0 13 0.00 13 79 0 11 0.00 11 80 1 9 10.00 10 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51 396 11.41 447 2 25 344 6.78 369 3 8 298 2.61 306 4 10 294 3.29 304 5 11 300 3.54 311 6 27 278 8.85 305 7 10 286 3.38 296 8 10 223 4.29 233 9 15 241 5.86 256 10 14 225 5.86 239 11 11 229 4.58 240 12 7 264 2.58 271 13 11 233 4.51 244 14 14 245 5.41 259 15 8 233 3.32 241 16 10 237 4.05 247 17 6 226 2.59 232 18 6 201 2.90 207 19 7 222 3.06 229 20 3 201 1.47 204 21 5 221 2.21 226 22 7 181 3.72 188 23 3 181 1.63 184 24 4 187 2.09 191 25 4 196 2.00 200 26 5 190 2.56 195 27 3 202 1.46 205 28 3 185 1.60 188 29 4 152 2.56 156 30 3 172 1.71 175 31 2 174 1.14 176 32 2 153 1.29 155 33 2 159 1.24 161 34 9 142 5.96 151 35 5 158 3.07 163 36 4 171 2.29 175 37 2 144 1.37 146 38 6 152 3.80 158 39 5 143 3.38 148 40 1 136 0.73 137 41 3 141 2.08 144 42 3 134 2.19 137 43 2 133 1.48 135 44 5 114 4.20 119 45 1 118 0.84 119 46 3 106 2.75 109 47 2 112 1.75 114 48 5 106 4.50 111 49 2 82 2.38 84 50 4 99 3.88 103 51 0 87 0.00 87 52 3 115 2.54 118 53 3 102 2.86 105 54 5 98 4.85 103 55 1 116 0.85 117 56 3 79 3.66 82 57 4 84 4.55 88 58 5 85 5.56 90 59 2 85 2.30 87 60 5 74 6.33 79 61 2 72 2.70 74 62 3 68 4.23 71 63 4 66 5.71 70 64 2 76 2.56 78 65 3 72 4.00 75 66 4 62 6.06 66 67 1 69 1.43 70 68 3 75 3.85 78 69 3 59 4.84 62 70 1 66 1.49 67 71 1 64 1.54 65 72 0 50 0.00 50 73 2 57 3.39 59 74 5 56 8.20 61 75 3 64 4.48 67 76 2 52 3.70 54 77 1 50 1.96 51 78 2 56 3.45 58 79 1 38 2.56 39 80 0 20 0.00 20