/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_4_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_4_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5293
Pairs without alignments under any condition
2473
Pairs that did not map uniquely
2234
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
134166
Methylated C's in CpG context
11739
Methylated C's in CHG context
687
Methylated C's in CHH context
4037
Methylated C's in Unknown context
420
Unmethylated C's in CpG context
5446
Unmethylated C's in CHG context
28279
Unmethylated C's in CHH context
83978
Unmethylated C's in Unknown context
1909
Percentage methylation (CpG context)
68.3%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
4.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1374
original top strand
CTOT
1269
complementary to original top strand
CTOB
1281
complementary to original bottom strand
OB
1369
original bottom strand
Deduplication
Alignments analysed
5293
Unique alignments
5293
Duplicates removed
0
Duplicated alignments were found at 0 different positions