/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_3_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_3_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5359
Pairs without alignments under any condition
2484
Pairs that did not map uniquely
2157
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
146538
Methylated C's in CpG context
16493
Methylated C's in CHG context
819
Methylated C's in CHH context
3681
Methylated C's in Unknown context
415
Unmethylated C's in CpG context
4720
Unmethylated C's in CHG context
31401
Unmethylated C's in CHH context
89424
Unmethylated C's in Unknown context
1800
Percentage methylation (CpG context)
77.7%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
4.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1299
original top strand
CTOT
1327
complementary to original top strand
CTOB
1398
complementary to original bottom strand
OB
1335
original bottom strand
Deduplication
Alignments analysed
5359
Unique alignments
5358
Duplicates removed
1
Duplicated alignments were found at 1 different positions