zr2096_2_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4976 lines in total Total number of methylation call strings processed: 9952 Final Cytosine Methylation Report ================================= Total number of C's analysed: 75465 Total methylated C's in CpG context: 6975 Total methylated C's in CHG context: 519 Total methylated C's in CHH context: 3320 Total C to T conversions in CpG context: 2934 Total C to T conversions in CHG context: 15916 Total C to T conversions in CHH context: 45801 C methylated in CpG context: 70.4% C methylated in CHG context: 3.2% C methylated in CHH context: 6.8%