CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83 35 70.34 118 2 80 34 70.18 114 3 71 35 66.98 106 4 80 35 69.57 115 5 76 24 76.00 100 6 86 31 73.50 117 7 77 41 65.25 118 8 77 39 66.38 116 9 89 29 75.42 118 10 98 38 72.06 136 11 78 30 72.22 108 12 82 34 70.69 116 13 71 33 68.27 104 14 81 42 65.85 123 15 92 22 80.70 114 16 87 36 70.73 123 17 75 36 67.57 111 18 95 22 81.20 117 19 96 37 72.18 133 20 87 25 77.68 112 21 98 34 74.24 132 22 94 25 78.99 119 23 101 40 71.63 141 24 89 26 77.39 115 25 85 35 70.83 120 26 96 34 73.85 130 27 76 35 68.47 111 28 82 41 66.67 123 29 93 37 71.54 130 30 88 31 73.95 119 31 88 35 71.54 123 32 91 42 68.42 133 33 90 38 70.31 128 34 82 26 75.93 108 35 82 46 64.06 128 36 92 36 71.88 128 37 82 26 75.93 108 38 74 37 66.67 111 39 85 33 72.03 118 40 78 27 74.29 105 41 67 28 70.53 95 42 83 34 70.94 117 43 67 30 69.07 97 44 77 33 70.00 110 45 88 34 72.13 122 46 78 40 66.10 118 47 57 23 71.25 80 48 69 32 68.32 101 49 67 31 68.37 98 50 68 34 66.67 102 51 67 30 69.07 97 52 72 25 74.23 97 53 61 22 73.49 83 54 64 35 64.65 99 55 74 21 77.89 95 56 64 25 71.91 89 57 77 22 77.78 99 58 62 22 73.81 84 59 58 26 69.05 84 60 69 20 77.53 89 61 65 33 66.33 98 62 60 24 71.43 84 63 56 20 73.68 76 64 57 22 72.15 79 65 46 20 69.70 66 66 53 15 77.94 68 67 50 24 67.57 74 68 43 22 66.15 65 69 47 14 77.05 61 70 41 18 69.49 59 71 47 25 65.28 72 72 44 15 74.58 59 73 48 29 62.34 77 74 48 21 69.57 69 75 42 16 72.41 58 76 40 24 62.50 64 77 44 20 68.75 64 78 37 12 75.51 49 79 30 15 66.67 45 80 11 6 64.71 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 21 188 10.05 209 2 13 182 6.67 195 3 16 186 7.92 202 4 12 182 6.19 194 5 9 192 4.48 201 6 10 180 5.26 190 7 10 179 5.29 189 8 7 183 3.68 190 9 9 175 4.89 184 10 6 154 3.75 160 11 9 223 3.88 232 12 5 184 2.65 189 13 2 178 1.11 180 14 5 192 2.54 197 15 6 211 2.76 217 16 7 189 3.57 196 17 4 187 2.09 191 18 4 173 2.26 177 19 2 216 0.92 218 20 1 182 0.55 183 21 3 184 1.60 187 22 2 166 1.19 168 23 4 199 1.97 203 24 4 236 1.67 240 25 5 197 2.48 202 26 9 181 4.74 190 27 9 202 4.27 211 28 1 188 0.53 189 29 15 178 7.77 193 30 3 191 1.55 194 31 5 186 2.62 191 32 1 220 0.45 221 33 2 192 1.03 194 34 4 174 2.25 178 35 5 179 2.72 184 36 4 209 1.88 213 37 6 162 3.57 168 38 7 198 3.41 205 39 7 195 3.47 202 40 6 179 3.24 185 41 6 182 3.19 188 42 4 193 2.03 197 43 4 169 2.31 173 44 2 151 1.31 153 45 6 173 3.35 179 46 5 165 2.94 170 47 5 172 2.82 177 48 1 191 0.52 192 49 3 161 1.83 164 50 1 164 0.61 165 51 4 147 2.65 151 52 9 154 5.52 163 53 6 152 3.80 158 54 2 173 1.14 175 55 5 138 3.50 143 56 6 137 4.20 143 57 3 146 2.01 149 58 6 149 3.87 155 59 3 121 2.42 124 60 5 147 3.29 152 61 3 139 2.11 142 62 5 122 3.94 127 63 3 121 2.42 124 64 2 121 1.63 123 65 1 131 0.76 132 66 5 127 3.79 132 67 4 115 3.36 119 68 2 112 1.75 114 69 1 109 0.91 110 70 1 113 0.88 114 71 6 115 4.96 121 72 3 109 2.68 112 73 5 109 4.39 114 74 4 104 3.70 108 75 3 100 2.91 103 76 1 114 0.87 115 77 4 102 3.77 106 78 2 100 1.96 102 79 4 68 5.56 72 80 2 35 5.41 37 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 57 571 9.08 628 2 67 589 10.21 656 3 72 558 11.43 630 4 45 539 7.71 584 5 66 520 11.26 586 6 48 514 8.54 562 7 63 532 10.59 595 8 35 510 6.42 545 9 51 507 9.14 558 10 56 569 8.96 625 11 59 522 10.15 581 12 59 491 10.73 550 13 77 497 13.41 574 14 54 540 9.09 594 15 55 563 8.90 618 16 59 546 9.75 605 17 52 549 8.65 601 18 65 519 11.13 584 19 47 538 8.03 585 20 64 555 10.34 619 21 66 592 10.03 658 22 57 531 9.69 588 23 50 539 8.49 589 24 60 566 9.58 626 25 68 582 10.46 650 26 53 564 8.59 617 27 52 580 8.23 632 28 48 590 7.52 638 29 43 568 7.04 611 30 52 558 8.52 610 31 59 545 9.77 604 32 45 539 7.71 584 33 48 521 8.44 569 34 47 542 7.98 589 35 36 513 6.56 549 36 50 521 8.76 571 37 53 523 9.20 576 38 34 497 6.40 531 39 33 560 5.56 593 40 39 532 6.83 571 41 41 517 7.35 558 42 43 486 8.13 529 43 33 497 6.23 530 44 39 522 6.95 561 45 33 511 6.07 544 46 32 482 6.23 514 47 30 532 5.34 562 48 26 509 4.86 535 49 27 499 5.13 526 50 31 456 6.37 487 51 23 455 4.81 478 52 21 468 4.29 489 53 23 430 5.08 453 54 23 403 5.40 426 55 18 422 4.09 440 56 20 414 4.61 434 57 22 385 5.41 407 58 20 381 4.99 401 59 17 403 4.05 420 60 6 401 1.47 407 61 14 386 3.50 400 62 17 390 4.18 407 63 10 369 2.64 379 64 17 350 4.63 367 65 15 358 4.02 373 66 18 354 4.84 372 67 9 336 2.61 345 68 10 332 2.92 342 69 10 325 2.99 335 70 9 324 2.70 333 71 10 319 3.04 329 72 10 290 3.33 300 73 9 321 2.73 330 74 14 308 4.35 322 75 6 300 1.96 306 76 11 271 3.90 282 77 11 252 4.18 263 78 10 228 4.20 238 79 6 197 2.96 203 80 8 95 7.77 103 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42 27 60.87 69 2 39 23 62.90 62 3 48 18 72.73 66 4 29 16 64.44 45 5 39 10 79.59 49 6 32 25 56.14 57 7 25 17 59.52 42 8 32 18 64.00 50 9 25 8 75.76 33 10 23 16 58.97 39 11 34 17 66.67 51 12 33 16 67.35 49 13 27 13 67.50 40 14 25 13 65.79 38 15 28 16 63.64 44 16 27 15 64.29 42 17 19 15 55.88 34 18 26 15 63.41 41 19 24 8 75.00 32 20 21 13 61.76 34 21 21 7 75.00 28 22 21 11 65.62 32 23 16 9 64.00 25 24 20 8 71.43 28 25 22 10 68.75 32 26 28 9 75.68 37 27 28 11 71.79 39 28 23 10 69.70 33 29 17 11 60.71 28 30 15 5 75.00 20 31 15 9 62.50 24 32 17 8 68.00 25 33 15 10 60.00 25 34 19 8 70.37 27 35 16 10 61.54 26 36 16 6 72.73 22 37 13 5 72.22 18 38 12 9 57.14 21 39 17 9 65.38 26 40 7 8 46.67 15 41 16 12 57.14 28 42 17 4 80.95 21 43 15 3 83.33 18 44 15 5 75.00 20 45 9 10 47.37 19 46 8 5 61.54 13 47 15 7 68.18 22 48 9 7 56.25 16 49 8 3 72.73 11 50 5 2 71.43 7 51 10 2 83.33 12 52 12 1 92.31 13 53 5 4 55.56 9 54 6 6 50.00 12 55 12 2 85.71 14 56 8 2 80.00 10 57 18 1 94.74 19 58 7 1 87.50 8 59 8 2 80.00 10 60 8 4 66.67 12 61 5 0 100.00 5 62 6 5 54.55 11 63 9 2 81.82 11 64 6 0 100.00 6 65 9 3 75.00 12 66 6 4 60.00 10 67 8 4 66.67 12 68 5 5 50.00 10 69 4 2 66.67 6 70 4 3 57.14 7 71 6 5 54.55 11 72 9 6 60.00 15 73 2 5 28.57 7 74 5 2 71.43 7 75 4 0 100.00 4 76 5 2 71.43 7 77 3 3 50.00 6 78 3 2 60.00 5 79 4 0 100.00 4 80 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 110 14.06 128 2 3 101 2.88 104 3 4 73 5.19 77 4 3 79 3.66 82 5 3 63 4.55 66 6 9 67 11.84 76 7 4 73 5.19 77 8 3 77 3.75 80 9 4 73 5.19 77 10 0 63 0.00 63 11 1 60 1.64 61 12 2 67 2.90 69 13 1 89 1.11 90 14 4 66 5.71 70 15 2 54 3.57 56 16 3 77 3.75 80 17 2 58 3.33 60 18 3 68 4.23 71 19 2 42 4.55 44 20 3 52 5.45 55 21 0 56 0.00 56 22 4 54 6.90 58 23 3 46 6.12 49 24 0 51 0.00 51 25 1 42 2.33 43 26 2 49 3.92 51 27 3 38 7.32 41 28 0 40 0.00 40 29 1 43 2.27 44 30 2 34 5.56 36 31 1 42 2.33 43 32 2 42 4.55 44 33 1 39 2.50 40 34 2 44 4.35 46 35 2 39 4.88 41 36 2 37 5.13 39 37 0 34 0.00 34 38 0 34 0.00 34 39 0 33 0.00 33 40 3 41 6.82 44 41 0 30 0.00 30 42 0 21 0.00 21 43 0 36 0.00 36 44 0 34 0.00 34 45 1 37 2.63 38 46 2 29 6.45 31 47 1 19 5.00 20 48 1 24 4.00 25 49 0 21 0.00 21 50 1 28 3.45 29 51 0 23 0.00 23 52 0 26 0.00 26 53 0 20 0.00 20 54 0 30 0.00 30 55 0 28 0.00 28 56 0 19 0.00 19 57 0 12 0.00 12 58 0 23 0.00 23 59 0 20 0.00 20 60 0 11 0.00 11 61 1 16 5.88 17 62 0 19 0.00 19 63 0 20 0.00 20 64 1 17 5.56 18 65 0 12 0.00 12 66 0 17 0.00 17 67 0 10 0.00 10 68 0 18 0.00 18 69 0 8 0.00 8 70 0 10 0.00 10 71 0 9 0.00 9 72 0 13 0.00 13 73 1 16 5.88 17 74 0 18 0.00 18 75 0 15 0.00 15 76 0 14 0.00 14 77 0 12 0.00 12 78 0 8 0.00 8 79 0 12 0.00 12 80 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54 390 12.16 444 2 27 262 9.34 289 3 27 266 9.22 293 4 12 236 4.84 248 5 5 221 2.21 226 6 12 194 5.83 206 7 11 201 5.19 212 8 8 206 3.74 214 9 10 203 4.69 213 10 16 182 8.08 198 11 9 181 4.74 190 12 10 177 5.35 187 13 8 197 3.90 205 14 10 172 5.49 182 15 7 174 3.87 181 16 9 167 5.11 176 17 12 186 6.06 198 18 9 155 5.49 164 19 6 157 3.68 163 20 6 156 3.70 162 21 8 146 5.19 154 22 5 148 3.27 153 23 7 149 4.49 156 24 5 133 3.62 138 25 3 136 2.16 139 26 6 133 4.32 139 27 1 126 0.79 127 28 6 130 4.41 136 29 3 129 2.27 132 30 2 144 1.37 146 31 4 120 3.23 124 32 2 119 1.65 121 33 3 124 2.36 127 34 4 113 3.42 117 35 1 120 0.83 121 36 2 86 2.27 88 37 4 101 3.81 105 38 7 109 6.03 116 39 1 94 1.05 95 40 3 95 3.06 98 41 6 96 5.88 102 42 4 91 4.21 95 43 6 89 6.32 95 44 2 91 2.15 93 45 2 81 2.41 83 46 3 73 3.95 76 47 4 86 4.44 90 48 0 82 0.00 82 49 1 79 1.25 80 50 3 70 4.11 73 51 4 74 5.13 78 52 1 64 1.54 65 53 4 57 6.56 61 54 2 67 2.90 69 55 2 76 2.56 78 56 1 71 1.39 72 57 2 64 3.03 66 58 1 59 1.67 60 59 1 51 1.92 52 60 1 48 2.04 49 61 2 52 3.70 54 62 1 48 2.04 49 63 4 53 7.02 57 64 4 48 7.69 52 65 1 49 2.00 50 66 1 47 2.08 48 67 2 52 3.70 54 68 1 47 2.08 48 69 0 32 0.00 32 70 1 40 2.44 41 71 4 45 8.16 49 72 1 49 2.00 50 73 0 40 0.00 40 74 2 40 4.76 42 75 0 36 0.00 36 76 2 29 6.45 31 77 0 32 0.00 32 78 1 31 3.12 32 79 2 34 5.56 36 80 0 20 0.00 20