/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
4978
Pairs without alignments under any condition
2974
Pairs that did not map uniquely
2048
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
122422
Methylated C's in CpG context
11397
Methylated C's in CHG context
809
Methylated C's in CHH context
5779
Methylated C's in Unknown context
491
Unmethylated C's in CpG context
4676
Unmethylated C's in CHG context
25777
Unmethylated C's in CHH context
73984
Unmethylated C's in Unknown context
1697
Percentage methylation (CpG context)
70.9%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
7.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1295
original top strand
CTOT
1242
complementary to original top strand
CTOB
1251
complementary to original bottom strand
OB
1190
original bottom strand
Deduplication
Alignments analysed
4978
Unique alignments
4976
Duplicates removed
2
Duplicated alignments were found at 2 different positions