zr2096_1_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 2872 lines in total Total number of methylation call strings processed: 5744 Final Cytosine Methylation Report ================================= Total number of C's analysed: 46083 Total methylated C's in CpG context: 3937 Total methylated C's in CHG context: 313 Total methylated C's in CHH context: 2987 Total C to T conversions in CpG context: 1686 Total C to T conversions in CHG context: 8808 Total C to T conversions in CHH context: 28352 C methylated in CpG context: 70.0% C methylated in CHG context: 3.4% C methylated in CHH context: 9.5%