CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33 18 64.71 51 2 45 26 63.38 71 3 44 15 74.58 59 4 42 19 68.85 61 5 25 25 50.00 50 6 36 18 66.67 54 7 38 16 70.37 54 8 45 12 78.95 57 9 41 10 80.39 51 10 39 19 67.24 58 11 49 22 69.01 71 12 29 18 61.70 47 13 42 20 67.74 62 14 32 11 74.42 43 15 42 16 72.41 58 16 52 11 82.54 63 17 44 18 70.97 62 18 51 24 68.00 75 19 41 13 75.93 54 20 35 22 61.40 57 21 41 25 62.12 66 22 36 18 66.67 54 23 33 20 62.26 53 24 40 15 72.73 55 25 36 20 64.29 56 26 51 18 73.91 69 27 50 15 76.92 65 28 53 15 77.94 68 29 39 29 57.35 68 30 29 18 61.70 47 31 50 16 75.76 66 32 36 12 75.00 48 33 41 26 61.19 67 34 45 14 76.27 59 35 42 21 66.67 63 36 43 19 69.35 62 37 37 21 63.79 58 38 35 14 71.43 49 39 37 17 68.52 54 40 40 16 71.43 56 41 51 15 77.27 66 42 38 21 64.41 59 43 43 16 72.88 59 44 31 11 73.81 42 45 36 14 72.00 50 46 49 19 72.06 68 47 40 14 74.07 54 48 52 17 75.36 69 49 39 11 78.00 50 50 33 16 67.35 49 51 41 9 82.00 50 52 27 17 61.36 44 53 40 9 81.63 49 54 32 12 72.73 44 55 36 12 75.00 48 56 31 16 65.96 47 57 42 10 80.77 52 58 41 11 78.85 52 59 39 11 78.00 50 60 41 19 68.33 60 61 43 9 82.69 52 62 39 14 73.58 53 63 31 18 63.27 49 64 31 14 68.89 45 65 35 9 79.55 44 66 27 10 72.97 37 67 35 14 71.43 49 68 29 15 65.91 44 69 28 7 80.00 35 70 30 16 65.22 46 71 24 13 64.86 37 72 31 14 68.89 45 73 31 12 72.09 43 74 26 17 60.47 43 75 29 14 67.44 43 76 33 7 82.50 40 77 28 12 70.00 40 78 19 7 73.08 26 79 21 10 67.74 31 80 14 3 82.35 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 25 97 20.49 122 2 6 90 6.25 96 3 8 91 8.08 99 4 1 92 1.08 93 5 6 93 6.06 99 6 9 98 8.41 107 7 2 94 2.08 96 8 6 83 6.74 89 9 5 82 5.75 87 10 2 87 2.25 89 11 2 92 2.13 94 12 3 82 3.53 85 13 0 83 0.00 83 14 7 100 6.54 107 15 6 82 6.82 88 16 2 66 2.94 68 17 3 84 3.45 87 18 2 92 2.13 94 19 4 91 4.21 95 20 2 95 2.06 97 21 3 85 3.41 88 22 2 81 2.41 83 23 6 91 6.19 97 24 2 95 2.06 97 25 3 100 2.91 103 26 2 90 2.17 92 27 5 81 5.81 86 28 3 82 3.53 85 29 2 108 1.82 110 30 3 81 3.57 84 31 3 83 3.49 86 32 3 96 3.03 99 33 7 91 7.14 98 34 3 87 3.33 90 35 2 84 2.33 86 36 2 100 1.96 102 37 3 95 3.06 98 38 1 93 1.06 94 39 3 100 2.91 103 40 3 77 3.75 80 41 2 75 2.60 77 42 6 99 5.71 105 43 3 99 2.94 102 44 3 77 3.75 80 45 2 82 2.38 84 46 6 101 5.61 107 47 5 86 5.49 91 48 2 82 2.38 84 49 2 91 2.15 93 50 5 99 4.81 104 51 2 79 2.47 81 52 3 87 3.33 90 53 2 68 2.86 70 54 2 76 2.56 78 55 0 79 0.00 79 56 1 84 1.18 85 57 2 76 2.56 78 58 0 83 0.00 83 59 2 73 2.67 75 60 0 74 0.00 74 61 3 81 3.57 84 62 3 68 4.23 71 63 0 65 0.00 65 64 4 69 5.48 73 65 4 73 5.19 77 66 1 79 1.25 80 67 3 73 3.95 76 68 1 65 1.52 66 69 0 68 0.00 68 70 1 69 1.43 70 71 1 68 1.45 69 72 1 69 1.43 70 73 2 61 3.17 63 74 0 61 0.00 61 75 0 65 0.00 65 76 1 62 1.59 63 77 1 63 1.56 64 78 2 55 3.51 57 79 2 40 4.76 42 80 0 26 0.00 26 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 55 301 15.45 356 2 58 318 15.43 376 3 62 305 16.89 367 4 53 289 15.50 342 5 41 300 12.02 341 6 51 274 15.69 325 7 43 268 13.83 311 8 61 272 18.32 333 9 55 303 15.36 358 10 58 284 16.96 342 11 56 294 16.00 350 12 57 276 17.12 333 13 61 280 17.89 341 14 61 291 17.33 352 15 55 304 15.32 359 16 52 313 14.25 365 17 47 309 13.20 356 18 52 311 14.33 363 19 53 307 14.72 360 20 52 306 14.53 358 21 56 312 15.22 368 22 53 284 15.73 337 23 40 314 11.30 354 24 47 338 12.21 385 25 54 306 15.00 360 26 49 324 13.14 373 27 34 298 10.24 332 28 38 325 10.47 363 29 49 309 13.69 358 30 57 292 16.33 349 31 59 329 15.21 388 32 39 306 11.30 345 33 42 320 11.60 362 34 50 285 14.93 335 35 44 323 11.99 367 36 31 312 9.04 343 37 42 306 12.07 348 38 35 301 10.42 336 39 40 299 11.80 339 40 31 288 9.72 319 41 31 304 9.25 335 42 39 273 12.50 312 43 45 289 13.47 334 44 29 303 8.73 332 45 26 308 7.78 334 46 34 270 11.18 304 47 24 298 7.45 322 48 19 301 5.94 320 49 16 286 5.30 302 50 23 250 8.42 273 51 26 258 9.15 284 52 25 249 9.12 274 53 18 261 6.45 279 54 14 246 5.38 260 55 19 259 6.83 278 56 16 240 6.25 256 57 18 258 6.52 276 58 18 233 7.17 251 59 10 233 4.12 243 60 13 237 5.20 250 61 12 215 5.29 227 62 13 210 5.83 223 63 15 225 6.25 240 64 7 221 3.07 228 65 7 190 3.55 197 66 4 212 1.85 216 67 10 195 4.88 205 68 13 184 6.60 197 69 9 182 4.71 191 70 8 190 4.04 198 71 11 197 5.29 208 72 8 174 4.40 182 73 6 174 3.33 180 74 9 177 4.84 186 75 3 184 1.60 187 76 6 198 2.94 204 77 4 178 2.20 182 78 4 177 2.21 181 79 1 151 0.66 152 80 3 57 5.00 60 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 15 70.00 50 2 22 11 66.67 33 3 29 17 63.04 46 4 31 12 72.09 43 5 12 13 48.00 25 6 14 7 66.67 21 7 16 12 57.14 28 8 17 9 65.38 26 9 19 13 59.38 32 10 17 16 51.52 33 11 8 9 47.06 17 12 17 6 73.91 23 13 16 9 64.00 25 14 13 9 59.09 22 15 13 5 72.22 18 16 18 7 72.00 25 17 17 8 68.00 25 18 23 6 79.31 29 19 18 7 72.00 25 20 21 9 70.00 30 21 10 15 40.00 25 22 12 4 75.00 16 23 17 11 60.71 28 24 21 5 80.77 26 25 13 5 72.22 18 26 17 5 77.27 22 27 14 6 70.00 20 28 21 7 75.00 28 29 8 6 57.14 14 30 13 9 59.09 22 31 16 8 66.67 24 32 11 3 78.57 14 33 16 8 66.67 24 34 16 5 76.19 21 35 12 4 75.00 16 36 15 6 71.43 21 37 16 3 84.21 19 38 14 5 73.68 19 39 18 7 72.00 25 40 13 3 81.25 16 41 4 0 100.00 4 42 11 3 78.57 14 43 7 3 70.00 10 44 14 6 70.00 20 45 5 5 50.00 10 46 10 3 76.92 13 47 15 9 62.50 24 48 2 3 40.00 5 49 7 2 77.78 9 50 9 3 75.00 12 51 9 0 100.00 9 52 6 4 60.00 10 53 9 5 64.29 14 54 9 5 64.29 14 55 11 3 78.57 14 56 6 4 60.00 10 57 10 5 66.67 15 58 4 5 44.44 9 59 11 6 64.71 17 60 9 2 81.82 11 61 9 2 81.82 11 62 6 2 75.00 8 63 4 3 57.14 7 64 7 3 70.00 10 65 8 4 66.67 12 66 6 1 85.71 7 67 6 2 75.00 8 68 7 4 63.64 11 69 7 3 70.00 10 70 6 3 66.67 9 71 3 4 42.86 7 72 5 4 55.56 9 73 6 1 85.71 7 74 8 1 88.89 9 75 6 1 85.71 7 76 3 3 50.00 6 77 5 2 71.43 7 78 5 2 71.43 7 79 3 3 50.00 6 80 5 0 100.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 78 11.36 88 2 4 52 7.14 56 3 5 55 8.33 60 4 2 70 2.78 72 5 0 45 0.00 45 6 7 38 15.56 45 7 1 53 1.85 54 8 3 58 4.92 61 9 1 45 2.17 46 10 4 45 8.16 49 11 0 47 0.00 47 12 1 42 2.33 43 13 1 43 2.27 44 14 3 44 6.38 47 15 1 33 2.94 34 16 2 46 4.17 48 17 1 43 2.27 44 18 1 40 2.44 41 19 2 33 5.71 35 20 1 43 2.27 44 21 0 26 0.00 26 22 0 41 0.00 41 23 0 37 0.00 37 24 0 49 0.00 49 25 0 27 0.00 27 26 1 22 4.35 23 27 0 40 0.00 40 28 2 28 6.67 30 29 0 27 0.00 27 30 0 35 0.00 35 31 0 34 0.00 34 32 2 25 7.41 27 33 0 32 0.00 32 34 1 42 2.33 43 35 0 27 0.00 27 36 0 32 0.00 32 37 0 22 0.00 22 38 2 31 6.06 33 39 1 32 3.03 33 40 0 25 0.00 25 41 0 34 0.00 34 42 2 13 13.33 15 43 0 26 0.00 26 44 1 25 3.85 26 45 1 19 5.00 20 46 0 26 0.00 26 47 1 29 3.33 30 48 0 22 0.00 22 49 1 17 5.56 18 50 0 24 0.00 24 51 0 28 0.00 28 52 0 21 0.00 21 53 0 18 0.00 18 54 0 13 0.00 13 55 1 25 3.85 26 56 0 19 0.00 19 57 0 18 0.00 18 58 0 20 0.00 20 59 1 23 4.17 24 60 0 11 0.00 11 61 0 17 0.00 17 62 0 10 0.00 10 63 0 24 0.00 24 64 0 16 0.00 16 65 0 14 0.00 14 66 0 18 0.00 18 67 1 20 4.76 21 68 1 11 8.33 12 69 0 11 0.00 11 70 0 12 0.00 12 71 0 14 0.00 14 72 0 13 0.00 13 73 0 21 0.00 21 74 0 12 0.00 12 75 0 6 0.00 6 76 0 9 0.00 9 77 2 8 20.00 10 78 0 16 0.00 16 79 0 9 0.00 9 80 0 5 0.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32 177 15.31 209 2 21 177 10.61 198 3 15 170 8.11 185 4 14 152 8.43 166 5 17 146 10.43 163 6 21 146 12.57 167 7 12 153 7.27 165 8 15 131 10.27 146 9 19 138 12.10 157 10 10 150 6.25 160 11 9 148 5.73 157 12 10 113 8.13 123 13 9 156 5.45 165 14 6 116 4.92 122 15 9 135 6.25 144 16 5 131 3.68 136 17 4 132 2.94 136 18 8 138 5.48 146 19 2 104 1.89 106 20 9 132 6.38 141 21 13 122 9.63 135 22 3 95 3.06 98 23 4 97 3.96 101 24 6 107 5.31 113 25 4 118 3.28 122 26 5 110 4.35 115 27 1 103 0.96 104 28 4 110 3.51 114 29 8 106 7.02 114 30 4 92 4.17 96 31 6 120 4.76 126 32 5 92 5.15 97 33 7 95 6.86 102 34 7 86 7.53 93 35 3 99 2.94 102 36 2 104 1.89 106 37 1 86 1.15 87 38 6 89 6.32 95 39 3 89 3.26 92 40 3 101 2.88 104 41 6 83 6.74 89 42 2 81 2.41 83 43 1 78 1.27 79 44 1 78 1.27 79 45 1 86 1.15 87 46 3 89 3.26 92 47 1 70 1.41 71 48 0 65 0.00 65 49 0 81 0.00 81 50 2 71 2.74 73 51 1 74 1.33 75 52 1 79 1.25 80 53 1 62 1.59 63 54 3 64 4.48 67 55 1 64 1.54 65 56 0 76 0.00 76 57 2 70 2.78 72 58 3 45 6.25 48 59 1 67 1.47 68 60 2 63 3.08 65 61 1 55 1.79 56 62 0 52 0.00 52 63 0 58 0.00 58 64 0 59 0.00 59 65 1 55 1.79 56 66 0 50 0.00 50 67 3 41 6.82 44 68 3 42 6.67 45 69 2 57 3.39 59 70 1 49 2.00 50 71 1 45 2.17 46 72 1 50 1.96 51 73 2 43 4.44 45 74 1 41 2.38 42 75 1 35 2.78 36 76 1 37 2.63 38 77 2 47 4.08 49 78 1 40 2.44 41 79 1 32 3.03 33 80 2 29 6.45 31