/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_1_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_1_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
2878
Pairs without alignments under any condition
6110
Pairs that did not map uniquely
1012
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
69925
Methylated C's in CpG context
5972
Methylated C's in CHG context
477
Methylated C's in CHH context
5296
Methylated C's in Unknown context
577
Unmethylated C's in CpG context
2480
Unmethylated C's in CHG context
13104
Unmethylated C's in CHH context
42596
Unmethylated C's in Unknown context
1249
Percentage methylation (CpG context)
70.7%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
11.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
710
original top strand
CTOT
755
complementary to original top strand
CTOB
692
complementary to original bottom strand
OB
721
original bottom strand
Deduplication
Alignments analysed
2878
Unique alignments
2872
Duplicates removed
6
Duplicated alignments were found at 6 different positions