zr2096_10_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5299 lines in total Total number of methylation call strings processed: 10598 Final Cytosine Methylation Report ================================= Total number of C's analysed: 96314 Total methylated C's in CpG context: 9242 Total methylated C's in CHG context: 552 Total methylated C's in CHH context: 2490 Total C to T conversions in CpG context: 3980 Total C to T conversions in CHG context: 20569 Total C to T conversions in CHH context: 59481 C methylated in CpG context: 69.9% C methylated in CHG context: 2.6% C methylated in CHH context: 4.0%