CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 87 55 61.27 142 2 82 47 63.57 129 3 96 46 67.61 142 4 97 46 67.83 143 5 93 43 68.38 136 6 82 30 73.21 112 7 76 58 56.72 134 8 82 57 58.99 139 9 76 49 60.80 125 10 104 45 69.80 149 11 101 30 77.10 131 12 101 37 73.19 138 13 88 44 66.67 132 14 94 54 63.51 148 15 91 41 68.94 132 16 86 37 69.92 123 17 104 48 68.42 152 18 86 36 70.49 122 19 124 39 76.07 163 20 100 33 75.19 133 21 95 39 70.90 134 22 89 46 65.93 135 23 126 31 80.25 157 24 98 46 68.06 144 25 96 37 72.18 133 26 107 39 73.29 146 27 107 36 74.83 143 28 106 42 71.62 148 29 94 37 71.76 131 30 97 32 75.19 129 31 105 44 70.47 149 32 97 36 72.93 133 33 107 47 69.48 154 34 97 47 67.36 144 35 93 33 73.81 126 36 86 46 65.15 132 37 89 39 69.53 128 38 113 36 75.84 149 39 97 30 76.38 127 40 87 38 69.60 125 41 89 33 72.95 122 42 94 36 72.31 130 43 93 34 73.23 127 44 102 46 68.92 148 45 84 30 73.68 114 46 106 40 72.60 146 47 82 39 67.77 121 48 106 38 73.61 144 49 81 27 75.00 108 50 100 34 74.63 134 51 90 42 68.18 132 52 79 37 68.10 116 53 87 49 63.97 136 54 78 31 71.56 109 55 84 44 65.62 128 56 81 34 70.43 115 57 88 27 76.52 115 58 88 30 74.58 118 59 85 37 69.67 122 60 83 33 71.55 116 61 75 31 70.75 106 62 90 31 74.38 121 63 101 31 76.52 132 64 69 24 74.19 93 65 82 23 78.10 105 66 76 35 68.47 111 67 80 32 71.43 112 68 76 35 68.47 111 69 57 27 67.86 84 70 61 36 62.89 97 71 76 45 62.81 121 72 62 26 70.45 88 73 69 19 78.41 88 74 55 26 67.90 81 75 64 30 68.09 94 76 58 32 64.44 90 77 65 28 69.89 93 78 57 20 74.03 77 79 44 21 67.69 65 80 20 6 76.92 26 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 20 207 8.81 227 2 10 227 4.22 237 3 7 200 3.38 207 4 12 213 5.33 225 5 7 168 4.00 175 6 7 224 3.03 231 7 8 196 3.92 204 8 10 201 4.74 211 9 7 187 3.61 194 10 7 214 3.17 221 11 5 206 2.37 211 12 7 204 3.32 211 13 6 218 2.68 224 14 4 221 1.78 225 15 6 216 2.70 222 16 6 209 2.79 215 17 9 212 4.07 221 18 6 222 2.63 228 19 6 195 2.99 201 20 7 214 3.17 221 21 7 218 3.11 225 22 4 217 1.81 221 23 10 221 4.33 231 24 6 213 2.74 219 25 8 218 3.54 226 26 4 210 1.87 214 27 5 228 2.15 233 28 6 190 3.06 196 29 5 204 2.39 209 30 4 231 1.70 235 31 9 211 4.09 220 32 2 212 0.93 214 33 4 226 1.74 230 34 5 217 2.25 222 35 4 229 1.72 233 36 8 243 3.19 251 37 5 219 2.23 224 38 7 202 3.35 209 39 3 234 1.27 237 40 5 212 2.30 217 41 7 227 2.99 234 42 2 240 0.83 242 43 7 236 2.88 243 44 6 198 2.94 204 45 5 212 2.30 217 46 5 201 2.43 206 47 6 203 2.87 209 48 2 169 1.17 171 49 6 211 2.76 217 50 7 179 3.76 186 51 4 197 1.99 201 52 10 202 4.72 212 53 3 202 1.46 205 54 2 231 0.86 233 55 3 218 1.36 221 56 3 185 1.60 188 57 5 210 2.33 215 58 2 190 1.04 192 59 4 180 2.17 184 60 4 177 2.21 181 61 1 175 0.57 176 62 5 193 2.53 198 63 0 167 0.00 167 64 1 162 0.61 163 65 3 161 1.83 164 66 2 172 1.15 174 67 4 165 2.37 169 68 2 139 1.42 141 69 5 152 3.18 157 70 2 159 1.24 161 71 3 158 1.86 161 72 4 151 2.58 155 73 1 138 0.72 139 74 4 130 2.99 134 75 1 147 0.68 148 76 4 137 2.84 141 77 2 130 1.52 132 78 3 116 2.52 119 79 2 87 2.25 89 80 1 46 2.13 47 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 51 670 7.07 721 2 53 654 7.50 707 3 37 662 5.29 699 4 44 602 6.81 646 5 43 625 6.44 668 6 39 608 6.03 647 7 48 625 7.13 673 8 46 605 7.07 651 9 33 594 5.26 627 10 35 635 5.22 670 11 31 590 4.99 621 12 37 577 6.03 614 13 31 575 5.12 606 14 32 613 4.96 645 15 32 599 5.07 631 16 35 622 5.33 657 17 29 604 4.58 633 18 39 642 5.73 681 19 31 631 4.68 662 20 30 603 4.74 633 21 38 644 5.57 682 22 35 629 5.27 664 23 36 633 5.38 669 24 33 614 5.10 647 25 28 657 4.09 685 26 38 639 5.61 677 27 34 619 5.21 653 28 36 612 5.56 648 29 38 617 5.80 655 30 32 584 5.19 616 31 31 613 4.81 644 32 27 585 4.41 612 33 38 591 6.04 629 34 31 620 4.76 651 35 27 647 4.01 674 36 31 615 4.80 646 37 33 601 5.21 634 38 23 600 3.69 623 39 24 621 3.72 645 40 26 615 4.06 641 41 20 631 3.07 651 42 21 611 3.32 632 43 26 583 4.27 609 44 28 586 4.56 614 45 18 598 2.92 616 46 16 584 2.67 600 47 22 591 3.59 613 48 13 607 2.10 620 49 16 581 2.68 597 50 16 577 2.70 593 51 13 567 2.24 580 52 14 540 2.53 554 53 12 553 2.12 565 54 16 516 3.01 532 55 16 544 2.86 560 56 8 542 1.45 550 57 22 515 4.10 537 58 9 507 1.74 516 59 15 495 2.94 510 60 16 528 2.94 544 61 21 540 3.74 561 62 13 497 2.55 510 63 10 497 1.97 507 64 11 505 2.13 516 65 15 462 3.14 477 66 12 433 2.70 445 67 12 439 2.66 451 68 15 452 3.21 467 69 11 438 2.45 449 70 11 463 2.32 474 71 20 395 4.82 415 72 12 422 2.76 434 73 11 466 2.31 477 74 10 409 2.39 419 75 11 384 2.78 395 76 10 399 2.44 409 77 14 386 3.50 400 78 9 371 2.37 380 79 2 306 0.65 308 80 4 137 2.84 141 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 55 24 69.62 79 2 54 28 65.85 82 3 49 23 68.06 72 4 55 26 67.90 81 5 57 23 71.25 80 6 42 26 61.76 68 7 58 31 65.17 89 8 50 21 70.42 71 9 59 22 72.84 81 10 42 19 68.85 61 11 44 27 61.97 71 12 40 20 66.67 60 13 44 27 61.97 71 14 51 13 79.69 64 15 37 24 60.66 61 16 39 19 67.24 58 17 43 24 64.18 67 18 34 16 68.00 50 19 38 15 71.70 53 20 39 22 63.93 61 21 41 16 71.93 57 22 42 12 77.78 54 23 35 25 58.33 60 24 30 14 68.18 44 25 34 22 60.71 56 26 38 20 65.52 58 27 35 18 66.04 53 28 36 16 69.23 52 29 33 14 70.21 47 30 30 16 65.22 46 31 43 15 74.14 58 32 31 24 56.36 55 33 30 18 62.50 48 34 32 11 74.42 43 35 25 8 75.76 33 36 44 12 78.57 56 37 25 9 73.53 34 38 28 6 82.35 34 39 24 14 63.16 38 40 28 18 60.87 46 41 40 10 80.00 50 42 24 8 75.00 32 43 29 11 72.50 40 44 23 14 62.16 37 45 27 8 77.14 35 46 27 16 62.79 43 47 19 6 76.00 25 48 30 10 75.00 40 49 24 7 77.42 31 50 23 6 79.31 29 51 21 4 84.00 25 52 19 5 79.17 24 53 19 12 61.29 31 54 17 8 68.00 25 55 19 7 73.08 26 56 23 5 82.14 28 57 20 6 76.92 26 58 16 5 76.19 21 59 22 7 75.86 29 60 17 14 54.84 31 61 18 8 69.23 26 62 20 15 57.14 35 63 17 7 70.83 24 64 20 5 80.00 25 65 10 5 66.67 15 66 9 8 52.94 17 67 17 4 80.95 21 68 14 2 87.50 16 69 16 3 84.21 19 70 7 7 50.00 14 71 14 6 70.00 20 72 14 9 60.87 23 73 8 4 66.67 12 74 9 9 50.00 18 75 3 8 27.27 11 76 13 3 81.25 16 77 4 5 44.44 9 78 10 4 71.43 14 79 6 4 60.00 10 80 7 2 77.78 9 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9 161 5.29 170 2 10 108 8.47 118 3 11 121 8.33 132 4 1 129 0.77 130 5 4 109 3.54 113 6 6 103 5.50 109 7 3 131 2.24 134 8 4 110 3.51 114 9 7 108 6.09 115 10 1 105 0.94 106 11 4 102 3.77 106 12 3 104 2.80 107 13 1 84 1.18 85 14 3 97 3.00 100 15 3 107 2.73 110 16 4 108 3.57 112 17 2 89 2.20 91 18 3 101 2.88 104 19 4 94 4.08 98 20 1 83 1.19 84 21 0 94 0.00 94 22 1 83 1.19 84 23 2 77 2.53 79 24 2 101 1.94 103 25 1 89 1.11 90 26 1 71 1.39 72 27 1 99 1.00 100 28 1 72 1.37 73 29 2 79 2.47 81 30 4 91 4.21 95 31 1 61 1.61 62 32 2 69 2.82 71 33 2 72 2.70 74 34 1 64 1.54 65 35 2 68 2.86 70 36 1 71 1.39 72 37 3 67 4.29 70 38 1 69 1.43 70 39 0 66 0.00 66 40 2 51 3.77 53 41 2 54 3.57 56 42 0 51 0.00 51 43 0 49 0.00 49 44 0 39 0.00 39 45 1 66 1.49 67 46 0 54 0.00 54 47 1 39 2.50 40 48 0 41 0.00 41 49 1 56 1.75 57 50 5 45 10.00 50 51 1 48 2.04 49 52 0 44 0.00 44 53 2 35 5.41 37 54 2 32 5.88 34 55 0 47 0.00 47 56 1 47 2.08 48 57 1 31 3.12 32 58 0 40 0.00 40 59 1 45 2.17 46 60 0 38 0.00 38 61 0 34 0.00 34 62 1 26 3.70 27 63 0 38 0.00 38 64 1 32 3.03 33 65 0 36 0.00 36 66 0 36 0.00 36 67 0 30 0.00 30 68 1 23 4.17 24 69 0 30 0.00 30 70 1 34 2.86 35 71 1 27 3.57 28 72 1 28 3.45 29 73 0 22 0.00 22 74 1 24 4.00 25 75 1 27 3.57 28 76 0 22 0.00 22 77 0 23 0.00 23 78 0 18 0.00 18 79 0 15 0.00 15 80 1 13 7.14 14 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 507 6.46 542 2 31 399 7.21 430 3 18 398 4.33 416 4 25 349 6.68 374 5 21 366 5.43 387 6 20 339 5.57 359 7 13 305 4.09 318 8 17 309 5.21 326 9 24 293 7.57 317 10 7 304 2.25 311 11 13 292 4.26 305 12 16 271 5.57 287 13 8 284 2.74 292 14 7 281 2.43 288 15 12 292 3.95 304 16 8 261 2.97 269 17 9 261 3.33 270 18 8 260 2.99 268 19 17 261 6.12 278 20 7 252 2.70 259 21 6 256 2.29 262 22 11 237 4.44 248 23 6 241 2.43 247 24 7 247 2.76 254 25 12 225 5.06 237 26 7 239 2.85 246 27 6 225 2.60 231 28 5 225 2.17 230 29 5 241 2.03 246 30 8 218 3.54 226 31 5 215 2.27 220 32 2 206 0.96 208 33 7 202 3.35 209 34 8 206 3.74 214 35 5 172 2.82 177 36 3 191 1.55 194 37 7 194 3.48 201 38 7 185 3.65 192 39 3 188 1.57 191 40 5 202 2.42 207 41 0 157 0.00 157 42 7 167 4.02 174 43 2 179 1.10 181 44 2 154 1.28 156 45 4 162 2.41 166 46 1 147 0.68 148 47 1 149 0.67 150 48 2 163 1.21 165 49 5 154 3.14 159 50 4 150 2.60 154 51 1 139 0.71 140 52 2 130 1.52 132 53 1 127 0.78 128 54 3 130 2.26 133 55 4 134 2.90 138 56 2 124 1.59 126 57 2 134 1.47 136 58 1 107 0.93 108 59 2 107 1.83 109 60 1 117 0.85 118 61 4 119 3.25 123 62 4 97 3.96 101 63 4 119 3.25 123 64 4 101 3.81 105 65 0 106 0.00 106 66 2 80 2.44 82 67 2 101 1.94 103 68 2 104 1.89 106 69 0 83 0.00 83 70 2 89 2.20 91 71 0 95 0.00 95 72 2 70 2.78 72 73 2 71 2.74 73 74 3 76 3.80 79 75 0 69 0.00 69 76 2 67 2.90 69 77 2 75 2.60 77 78 1 75 1.32 76 79 0 58 0.00 58 80 0 47 0.00 47