/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_10_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_10_s1_R2_val_2.fq.gz
Data processed at 15:28 on 2018-10-11
Alignment
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5299
Pairs without alignments under any condition
2607
Pairs that did not map uniquely
2094
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
144198
Methylated C's in CpG context
13959
Methylated C's in CHG context
816
Methylated C's in CHH context
3964
Methylated C's in Unknown context
367
Unmethylated C's in CpG context
5889
Unmethylated C's in CHG context
31109
Unmethylated C's in CHH context
88461
Unmethylated C's in Unknown context
1661
Percentage methylation (CpG context)
70.3%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
4.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1386
original top strand
CTOT
1293
complementary to original top strand
CTOB
1328
complementary to original bottom strand
OB
1292
original bottom strand
Deduplication
Alignments analysed
5299
Unique alignments
5299
Duplicates removed
0
Duplicated alignments were found at 0 different positions