CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 16 72.88 59 2 48 10 82.76 58 3 42 12 77.78 54 4 48 9 84.21 57 5 43 8 84.31 51 6 43 12 78.18 55 7 51 14 78.46 65 8 43 7 86.00 50 9 42 12 77.78 54 10 38 9 80.85 47 11 53 10 84.13 63 12 61 8 88.41 69 13 46 10 82.14 56 14 51 11 82.26 62 15 57 11 83.82 68 16 40 19 67.80 59 17 39 11 78.00 50 18 41 12 77.36 53 19 54 3 94.74 57 20 57 10 85.07 67 21 60 11 84.51 71 22 61 8 88.41 69 23 51 10 83.61 61 24 39 14 73.58 53 25 45 9 83.33 54 26 48 13 78.69 61 27 58 8 87.88 66 28 52 9 85.25 61 29 48 10 82.76 58 30 47 9 83.93 56 31 54 7 88.52 61 32 48 10 82.76 58 33 55 10 84.62 65 34 50 7 87.72 57 35 47 11 81.03 58 36 43 10 81.13 53 37 40 5 88.89 45 38 42 8 84.00 50 39 53 7 88.33 60 40 57 9 86.36 66 41 53 13 80.30 66 42 55 10 84.62 65 43 50 7 87.72 57 44 55 9 85.94 64 45 46 5 90.20 51 46 38 7 84.44 45 47 49 5 90.74 54 48 47 8 85.45 55 49 52 11 82.54 63 50 36 13 73.47 49 51 43 11 79.63 54 52 33 9 78.57 42 53 45 10 81.82 55 54 42 9 82.35 51 55 46 8 85.19 54 56 49 6 89.09 55 57 38 4 90.48 42 58 34 5 87.18 39 59 37 7 84.09 44 60 39 4 90.70 43 61 31 8 79.49 39 62 24 6 80.00 30 63 36 8 81.82 44 64 35 4 89.74 39 65 30 6 83.33 36 66 42 6 87.50 48 67 30 3 90.91 33 68 33 7 82.50 40 69 21 8 72.41 29 70 32 8 80.00 40 71 28 1 96.55 29 72 26 5 83.87 31 73 27 3 90.00 30 74 22 4 84.62 26 75 23 8 74.19 31 76 23 4 85.19 27 77 17 3 85.00 20 78 23 2 92.00 25 79 24 1 96.00 25 80 8 1 88.89 9 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9 97 8.49 106 2 2 82 2.38 84 3 3 89 3.26 92 4 2 75 2.60 77 5 3 90 3.23 93 6 3 87 3.33 90 7 2 95 2.06 97 8 2 91 2.15 93 9 4 82 4.65 86 10 0 101 0.00 101 11 0 103 0.00 103 12 2 105 1.87 107 13 3 87 3.33 90 14 1 92 1.08 93 15 1 104 0.95 105 16 2 92 2.13 94 17 1 83 1.19 84 18 1 108 0.92 109 19 0 97 0.00 97 20 3 81 3.57 84 21 1 99 1.00 100 22 1 103 0.96 104 23 4 104 3.70 108 24 1 77 1.28 78 25 0 97 0.00 97 26 3 108 2.70 111 27 0 106 0.00 106 28 4 90 4.26 94 29 6 109 5.22 115 30 2 83 2.35 85 31 1 91 1.09 92 32 4 102 3.77 106 33 0 82 0.00 82 34 3 88 3.30 91 35 2 88 2.22 90 36 1 87 1.14 88 37 3 65 4.41 68 38 4 73 5.19 77 39 1 80 1.23 81 40 1 74 1.33 75 41 2 102 1.92 104 42 1 78 1.27 79 43 4 84 4.55 88 44 2 87 2.25 89 45 1 84 1.18 85 46 2 74 2.63 76 47 1 85 1.16 86 48 3 76 3.80 79 49 0 79 0.00 79 50 2 80 2.44 82 51 0 64 0.00 64 52 2 64 3.03 66 53 0 61 0.00 61 54 1 69 1.43 70 55 1 63 1.56 64 56 1 67 1.47 68 57 0 74 0.00 74 58 1 82 1.20 83 59 0 61 0.00 61 60 0 69 0.00 69 61 2 53 3.64 55 62 1 60 1.64 61 63 0 75 0.00 75 64 0 60 0.00 60 65 1 67 1.47 68 66 1 60 1.64 61 67 0 42 0.00 42 68 3 51 5.56 54 69 1 60 1.64 61 70 1 55 1.79 56 71 1 45 2.17 46 72 4 51 7.27 55 73 1 38 2.56 39 74 0 45 0.00 45 75 0 43 0.00 43 76 0 51 0.00 51 77 2 37 5.13 39 78 1 39 2.50 40 79 0 24 0.00 24 80 0 16 0.00 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 240 1.64 244 2 6 238 2.46 244 3 2 261 0.76 263 4 1 263 0.38 264 5 5 262 1.87 267 6 3 236 1.26 239 7 6 265 2.21 271 8 3 245 1.21 248 9 3 216 1.37 219 10 6 255 2.30 261 11 7 235 2.89 242 12 6 222 2.63 228 13 3 217 1.36 220 14 6 247 2.37 253 15 4 223 1.76 227 16 4 248 1.59 252 17 3 237 1.25 240 18 10 236 4.07 246 19 4 260 1.52 264 20 4 248 1.59 252 21 8 216 3.57 224 22 2 225 0.88 227 23 5 245 2.00 250 24 5 238 2.06 243 25 5 246 1.99 251 26 3 221 1.34 224 27 7 218 3.11 225 28 7 230 2.95 237 29 6 230 2.54 236 30 2 228 0.87 230 31 5 253 1.94 258 32 5 242 2.02 247 33 6 233 2.51 239 34 6 229 2.55 235 35 4 255 1.54 259 36 2 238 0.83 240 37 0 220 0.00 220 38 5 211 2.31 216 39 0 201 0.00 201 40 8 218 3.54 226 41 3 202 1.46 205 42 6 197 2.96 203 43 3 204 1.45 207 44 1 226 0.44 227 45 1 220 0.45 221 46 3 200 1.48 203 47 2 205 0.97 207 48 2 178 1.11 180 49 2 190 1.04 192 50 3 217 1.36 220 51 4 193 2.03 197 52 2 186 1.06 188 53 3 190 1.55 193 54 3 182 1.62 185 55 3 181 1.63 184 56 2 194 1.02 196 57 2 182 1.09 184 58 1 180 0.55 181 59 5 196 2.49 201 60 1 178 0.56 179 61 0 157 0.00 157 62 0 170 0.00 170 63 2 163 1.21 165 64 1 160 0.62 161 65 3 141 2.08 144 66 1 147 0.68 148 67 3 131 2.24 134 68 1 158 0.63 159 69 2 156 1.27 158 70 0 144 0.00 144 71 3 152 1.94 155 72 2 142 1.39 144 73 0 117 0.00 117 74 3 117 2.50 120 75 3 132 2.22 135 76 5 123 3.91 128 77 1 126 0.79 127 78 1 113 0.88 114 79 0 78 0.00 78 80 1 41 2.38 42 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37 7 84.09 44 2 21 3 87.50 24 3 19 4 82.61 23 4 18 7 72.00 25 5 14 5 73.68 19 6 19 4 82.61 23 7 22 4 84.62 26 8 9 1 90.00 10 9 22 2 91.67 24 10 12 2 85.71 14 11 10 5 66.67 15 12 13 4 76.47 17 13 17 3 85.00 20 14 15 3 83.33 18 15 20 1 95.24 21 16 17 0 100.00 17 17 13 5 72.22 18 18 15 1 93.75 16 19 6 4 60.00 10 20 18 2 90.00 20 21 8 3 72.73 11 22 10 2 83.33 12 23 9 1 90.00 10 24 13 2 86.67 15 25 12 4 75.00 16 26 11 2 84.62 13 27 12 1 92.31 13 28 9 1 90.00 10 29 8 1 88.89 9 30 12 3 80.00 15 31 10 2 83.33 12 32 7 0 100.00 7 33 9 3 75.00 12 34 6 3 66.67 9 35 11 0 100.00 11 36 11 0 100.00 11 37 10 1 90.91 11 38 12 4 75.00 16 39 9 4 69.23 13 40 6 1 85.71 7 41 6 2 75.00 8 42 6 1 85.71 7 43 4 1 80.00 5 44 4 2 66.67 6 45 5 1 83.33 6 46 5 2 71.43 7 47 10 4 71.43 14 48 6 0 100.00 6 49 5 1 83.33 6 50 6 0 100.00 6 51 5 1 83.33 6 52 3 0 100.00 3 53 8 4 66.67 12 54 5 0 100.00 5 55 6 0 100.00 6 56 0 0 0 57 2 0 100.00 2 58 4 0 100.00 4 59 3 2 60.00 5 60 5 1 83.33 6 61 4 0 100.00 4 62 2 2 50.00 4 63 1 1 50.00 2 64 2 0 100.00 2 65 3 0 100.00 3 66 6 0 100.00 6 67 5 0 100.00 5 68 2 0 100.00 2 69 4 0 100.00 4 70 1 0 100.00 1 71 3 0 100.00 3 72 1 0 100.00 1 73 1 1 50.00 2 74 4 0 100.00 4 75 0 0 0 76 2 0 100.00 2 77 0 1 0.00 1 78 4 2 66.67 6 79 0 1 0.00 1 80 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 51 3.77 53 2 0 47 0.00 47 3 0 46 0.00 46 4 1 33 2.94 34 5 0 34 0.00 34 6 0 29 0.00 29 7 1 38 2.56 39 8 3 35 7.89 38 9 0 30 0.00 30 10 0 44 0.00 44 11 0 28 0.00 28 12 1 28 3.45 29 13 1 32 3.03 33 14 0 32 0.00 32 15 0 40 0.00 40 16 1 28 3.45 29 17 1 18 5.26 19 18 1 23 4.17 24 19 2 24 7.69 26 20 0 32 0.00 32 21 1 24 4.00 25 22 0 18 0.00 18 23 0 22 0.00 22 24 0 19 0.00 19 25 1 27 3.57 28 26 0 15 0.00 15 27 1 21 4.55 22 28 0 22 0.00 22 29 0 17 0.00 17 30 0 17 0.00 17 31 0 20 0.00 20 32 0 15 0.00 15 33 2 19 9.52 21 34 0 18 0.00 18 35 1 11 8.33 12 36 0 17 0.00 17 37 0 13 0.00 13 38 0 19 0.00 19 39 0 16 0.00 16 40 0 11 0.00 11 41 0 17 0.00 17 42 0 15 0.00 15 43 1 11 8.33 12 44 0 19 0.00 19 45 0 13 0.00 13 46 0 13 0.00 13 47 0 8 0.00 8 48 0 11 0.00 11 49 1 11 8.33 12 50 0 9 0.00 9 51 0 8 0.00 8 52 0 10 0.00 10 53 0 5 0.00 5 54 1 9 10.00 10 55 1 9 10.00 10 56 0 10 0.00 10 57 0 6 0.00 6 58 0 9 0.00 9 59 1 7 12.50 8 60 0 9 0.00 9 61 0 12 0.00 12 62 0 10 0.00 10 63 0 9 0.00 9 64 0 5 0.00 5 65 0 3 0.00 3 66 0 8 0.00 8 67 1 6 14.29 7 68 0 5 0.00 5 69 0 2 0.00 2 70 1 8 11.11 9 71 0 6 0.00 6 72 0 6 0.00 6 73 0 6 0.00 6 74 0 5 0.00 5 75 1 6 14.29 7 76 0 3 0.00 3 77 0 5 0.00 5 78 0 5 0.00 5 79 0 4 0.00 4 80 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 177 1.67 180 2 4 142 2.74 146 3 2 120 1.64 122 4 1 110 0.90 111 5 2 130 1.52 132 6 4 112 3.45 116 7 0 91 0.00 91 8 2 98 2.00 100 9 2 89 2.20 91 10 2 73 2.67 75 11 0 100 0.00 100 12 0 96 0.00 96 13 2 77 2.53 79 14 1 92 1.08 93 15 4 71 5.33 75 16 1 79 1.25 80 17 3 70 4.11 73 18 2 71 2.74 73 19 1 61 1.61 62 20 2 59 3.28 61 21 2 60 3.23 62 22 1 65 1.52 66 23 2 50 3.85 52 24 1 52 1.89 53 25 0 59 0.00 59 26 1 55 1.79 56 27 2 51 3.77 53 28 2 49 3.92 51 29 0 45 0.00 45 30 1 60 1.64 61 31 3 49 5.77 52 32 0 52 0.00 52 33 0 47 0.00 47 34 2 47 4.08 49 35 0 40 0.00 40 36 0 36 0.00 36 37 1 33 2.94 34 38 0 39 0.00 39 39 0 38 0.00 38 40 0 33 0.00 33 41 0 39 0.00 39 42 2 27 6.90 29 43 0 39 0.00 39 44 1 34 2.86 35 45 0 33 0.00 33 46 0 31 0.00 31 47 1 28 3.45 29 48 1 30 3.23 31 49 0 40 0.00 40 50 0 29 0.00 29 51 0 32 0.00 32 52 0 47 0.00 47 53 0 25 0.00 25 54 0 36 0.00 36 55 0 32 0.00 32 56 0 31 0.00 31 57 0 27 0.00 27 58 0 26 0.00 26 59 0 26 0.00 26 60 0 24 0.00 24 61 1 26 3.70 27 62 0 31 0.00 31 63 1 23 4.17 24 64 0 21 0.00 21 65 1 27 3.57 28 66 0 21 0.00 21 67 0 19 0.00 19 68 0 16 0.00 16 69 0 21 0.00 21 70 1 16 5.88 17 71 0 8 0.00 8 72 1 15 6.25 16 73 0 24 0.00 24 74 0 16 0.00 16 75 1 17 5.56 18 76 0 9 0.00 9 77 0 14 0.00 14 78 0 9 0.00 9 79 0 5 0.00 5 80 0 7 0.00 7