Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_9_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_9_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 1890
Pairs without alignments under any condition 6992
Pairs that did not map uniquely 1118
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 53419
Methylated C's in CpG context 6780
Methylated C's in CHG context 256
Methylated C's in CHH context 552
Methylated C's in Unknown context 0
Unmethylated C's in CpG context 1291
Unmethylated C's in CHG context 12269
Unmethylated C's in CHH context 32271
Unmethylated C's in Unknown context 20
Percentage methylation (CpG context) 84.0%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 474 original top strand
CTOT 455 complementary to original top strand
CTOB 400 complementary to original bottom strand
OB 561 original bottom strand