CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28 10 73.68 38 2 38 10 79.17 48 3 32 12 72.73 44 4 36 8 81.82 44 5 37 17 68.52 54 6 32 11 74.42 43 7 34 7 82.93 41 8 38 7 84.44 45 9 33 11 75.00 44 10 34 12 73.91 46 11 35 15 70.00 50 12 31 14 68.89 45 13 34 11 75.56 45 14 32 12 72.73 44 15 32 10 76.19 42 16 25 7 78.12 32 17 32 10 76.19 42 18 36 12 75.00 48 19 29 6 82.86 35 20 32 13 71.11 45 21 26 14 65.00 40 22 23 11 67.65 34 23 37 12 75.51 49 24 38 11 77.55 49 25 26 15 63.41 41 26 35 15 70.00 50 27 31 3 91.18 34 28 36 15 70.59 51 29 28 7 80.00 35 30 28 13 68.29 41 31 26 13 66.67 39 32 32 14 69.57 46 33 36 8 81.82 44 34 32 13 71.11 45 35 37 17 68.52 54 36 35 7 83.33 42 37 33 15 68.75 48 38 36 8 81.82 44 39 28 12 70.00 40 40 24 13 64.86 37 41 30 6 83.33 36 42 24 11 68.57 35 43 37 4 90.24 41 44 35 7 83.33 42 45 27 10 72.97 37 46 31 12 72.09 43 47 26 8 76.47 34 48 27 16 62.79 43 49 31 5 86.11 36 50 32 9 78.05 41 51 36 10 78.26 46 52 28 7 80.00 35 53 30 9 76.92 39 54 33 7 82.50 40 55 30 8 78.95 38 56 26 8 76.47 34 57 31 8 79.49 39 58 26 5 83.87 31 59 24 11 68.57 35 60 24 10 70.59 34 61 24 10 70.59 34 62 36 7 83.72 43 63 24 6 80.00 30 64 28 9 75.68 37 65 16 10 61.54 26 66 18 12 60.00 30 67 15 7 68.18 22 68 11 13 45.83 24 69 22 14 61.11 36 70 17 5 77.27 22 71 14 10 58.33 24 72 20 4 83.33 24 73 26 4 86.67 30 74 18 7 72.00 25 75 21 17 55.26 38 76 25 5 83.33 30 77 17 5 77.27 22 78 16 11 59.26 27 79 15 3 83.33 18 80 8 4 66.67 12 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 86 1.15 87 2 1 74 1.33 75 3 3 83 3.49 86 4 1 92 1.08 93 5 0 73 0.00 73 6 1 81 1.22 82 7 0 74 0.00 74 8 1 76 1.30 77 9 2 97 2.02 99 10 0 70 0.00 70 11 4 80 4.76 84 12 1 88 1.12 89 13 1 96 1.03 97 14 1 73 1.35 74 15 1 80 1.23 81 16 2 85 2.30 87 17 2 93 2.11 95 18 0 73 0.00 73 19 0 89 0.00 89 20 0 68 0.00 68 21 0 94 0.00 94 22 1 78 1.27 79 23 2 91 2.15 93 24 2 88 2.22 90 25 0 70 0.00 70 26 2 72 2.70 74 27 1 60 1.64 61 28 1 82 1.20 83 29 2 72 2.70 74 30 3 79 3.66 82 31 2 77 2.53 79 32 1 79 1.25 80 33 1 74 1.33 75 34 0 97 0.00 97 35 1 82 1.20 83 36 2 80 2.44 82 37 2 76 2.56 78 38 0 72 0.00 72 39 1 74 1.33 75 40 0 82 0.00 82 41 1 70 1.41 71 42 0 80 0.00 80 43 1 75 1.32 76 44 1 84 1.18 85 45 2 69 2.82 71 46 0 62 0.00 62 47 1 68 1.45 69 48 1 72 1.37 73 49 1 76 1.30 77 50 3 45 6.25 48 51 1 64 1.54 65 52 0 65 0.00 65 53 0 69 0.00 69 54 2 57 3.39 59 55 1 66 1.49 67 56 2 54 3.57 56 57 1 58 1.69 59 58 0 61 0.00 61 59 1 58 1.69 59 60 1 51 1.92 52 61 1 48 2.04 49 62 2 80 2.44 82 63 2 46 4.17 48 64 0 37 0.00 37 65 0 68 0.00 68 66 1 51 1.92 52 67 0 46 0.00 46 68 0 43 0.00 43 69 3 36 7.69 39 70 2 61 3.17 63 71 2 42 4.55 44 72 0 44 0.00 44 73 1 29 3.33 30 74 1 49 2.00 50 75 0 50 0.00 50 76 0 42 0.00 42 77 0 40 0.00 40 78 0 37 0.00 37 79 0 25 0.00 25 80 0 15 0.00 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 228 2.15 233 2 5 225 2.17 230 3 2 253 0.78 255 4 10 232 4.13 242 5 1 214 0.47 215 6 5 199 2.45 204 7 9 217 3.98 226 8 6 212 2.75 218 9 9 215 4.02 224 10 7 220 3.08 227 11 2 232 0.85 234 12 9 213 4.05 222 13 5 220 2.22 225 14 8 217 3.56 225 15 6 224 2.61 230 16 3 207 1.43 210 17 7 194 3.48 201 18 7 233 2.92 240 19 7 234 2.90 241 20 5 233 2.10 238 21 8 211 3.65 219 22 3 222 1.33 225 23 6 216 2.70 222 24 6 212 2.75 218 25 3 216 1.37 219 26 3 214 1.38 217 27 5 212 2.30 217 28 2 214 0.93 216 29 4 213 1.84 217 30 3 201 1.47 204 31 6 209 2.79 215 32 1 205 0.49 206 33 7 188 3.59 195 34 2 207 0.96 209 35 4 199 1.97 203 36 3 198 1.49 201 37 2 216 0.92 218 38 5 208 2.35 213 39 4 195 2.01 199 40 7 191 3.54 198 41 7 171 3.93 178 42 3 190 1.55 193 43 3 212 1.40 215 44 7 190 3.55 197 45 3 170 1.73 173 46 5 188 2.59 193 47 7 162 4.14 169 48 3 192 1.54 195 49 3 182 1.62 185 50 1 171 0.58 172 51 5 178 2.73 183 52 8 176 4.35 184 53 3 169 1.74 172 54 7 178 3.78 185 55 1 177 0.56 178 56 4 168 2.33 172 57 4 163 2.40 167 58 3 158 1.86 161 59 2 159 1.24 161 60 2 168 1.18 170 61 5 162 2.99 167 62 2 148 1.33 150 63 5 138 3.50 143 64 2 142 1.39 144 65 1 127 0.78 128 66 4 152 2.56 156 67 4 156 2.50 160 68 2 141 1.40 143 69 5 149 3.25 154 70 5 138 3.50 143 71 5 145 3.33 150 72 1 136 0.73 137 73 1 131 0.76 132 74 2 134 1.47 136 75 0 124 0.00 124 76 1 113 0.88 114 77 3 116 2.52 119 78 4 108 3.57 112 79 1 80 1.23 81 80 0 50 0.00 50 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26 11 70.27 37 2 25 2 92.59 27 3 17 3 85.00 20 4 18 3 85.71 21 5 13 0 100.00 13 6 17 6 73.91 23 7 15 6 71.43 21 8 9 3 75.00 12 9 14 4 77.78 18 10 15 6 71.43 21 11 18 3 85.71 21 12 11 6 64.71 17 13 12 5 70.59 17 14 17 5 77.27 22 15 13 1 92.86 14 16 7 3 70.00 10 17 7 4 63.64 11 18 8 4 66.67 12 19 13 3 81.25 16 20 10 2 83.33 12 21 6 4 60.00 10 22 15 2 88.24 17 23 9 3 75.00 12 24 9 2 81.82 11 25 11 2 84.62 13 26 9 4 69.23 13 27 4 2 66.67 6 28 10 2 83.33 12 29 10 0 100.00 10 30 11 6 64.71 17 31 7 1 87.50 8 32 6 3 66.67 9 33 5 4 55.56 9 34 10 2 83.33 12 35 5 3 62.50 8 36 8 3 72.73 11 37 5 3 62.50 8 38 10 2 83.33 12 39 2 2 50.00 4 40 8 0 100.00 8 41 3 4 42.86 7 42 4 1 80.00 5 43 1 2 33.33 3 44 6 3 66.67 9 45 2 4 33.33 6 46 6 0 100.00 6 47 5 1 83.33 6 48 4 3 57.14 7 49 4 2 66.67 6 50 4 1 80.00 5 51 4 2 66.67 6 52 7 2 77.78 9 53 7 1 87.50 8 54 9 2 81.82 11 55 3 2 60.00 5 56 1 3 25.00 4 57 2 0 100.00 2 58 5 0 100.00 5 59 6 0 100.00 6 60 1 0 100.00 1 61 3 1 75.00 4 62 3 2 60.00 5 63 4 0 100.00 4 64 6 0 100.00 6 65 3 0 100.00 3 66 3 2 60.00 5 67 2 0 100.00 2 68 4 1 80.00 5 69 1 0 100.00 1 70 2 0 100.00 2 71 1 1 50.00 2 72 2 2 50.00 4 73 5 1 83.33 6 74 3 0 100.00 3 75 1 2 33.33 3 76 5 0 100.00 5 77 2 0 100.00 2 78 2 0 100.00 2 79 0 1 0.00 1 80 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 50 1.96 51 2 1 49 2.00 50 3 0 43 0.00 43 4 0 28 0.00 28 5 1 41 2.38 42 6 1 38 2.56 39 7 0 26 0.00 26 8 0 37 0.00 37 9 0 32 0.00 32 10 2 32 5.88 34 11 0 32 0.00 32 12 0 25 0.00 25 13 0 34 0.00 34 14 1 21 4.55 22 15 1 27 3.57 28 16 0 22 0.00 22 17 0 25 0.00 25 18 1 39 2.50 40 19 1 29 3.33 30 20 0 33 0.00 33 21 0 19 0.00 19 22 0 30 0.00 30 23 0 15 0.00 15 24 0 16 0.00 16 25 0 25 0.00 25 26 1 24 4.00 25 27 0 20 0.00 20 28 0 24 0.00 24 29 0 16 0.00 16 30 0 18 0.00 18 31 0 18 0.00 18 32 0 15 0.00 15 33 1 21 4.55 22 34 0 15 0.00 15 35 0 23 0.00 23 36 1 16 5.88 17 37 0 12 0.00 12 38 0 17 0.00 17 39 0 18 0.00 18 40 0 10 0.00 10 41 0 13 0.00 13 42 0 13 0.00 13 43 0 12 0.00 12 44 0 10 0.00 10 45 0 12 0.00 12 46 0 12 0.00 12 47 0 6 0.00 6 48 0 11 0.00 11 49 0 16 0.00 16 50 0 8 0.00 8 51 0 9 0.00 9 52 0 10 0.00 10 53 0 12 0.00 12 54 0 7 0.00 7 55 0 7 0.00 7 56 0 8 0.00 8 57 0 11 0.00 11 58 0 8 0.00 8 59 0 4 0.00 4 60 0 9 0.00 9 61 0 7 0.00 7 62 0 5 0.00 5 63 0 10 0.00 10 64 0 9 0.00 9 65 0 8 0.00 8 66 0 5 0.00 5 67 0 2 0.00 2 68 0 7 0.00 7 69 0 8 0.00 8 70 0 3 0.00 3 71 0 4 0.00 4 72 0 11 0.00 11 73 0 7 0.00 7 74 0 4 0.00 4 75 0 6 0.00 6 76 0 3 0.00 3 77 0 7 0.00 7 78 0 8 0.00 8 79 0 9 0.00 9 80 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 171 2.84 176 2 1 120 0.83 121 3 5 119 4.03 124 4 0 98 0.00 98 5 2 107 1.83 109 6 3 99 2.94 102 7 0 110 0.00 110 8 2 94 2.08 96 9 2 102 1.92 104 10 2 88 2.22 90 11 0 76 0.00 76 12 1 83 1.19 84 13 0 87 0.00 87 14 1 81 1.22 82 15 1 71 1.39 72 16 2 72 2.70 74 17 1 65 1.52 66 18 1 84 1.18 85 19 0 73 0.00 73 20 0 64 0.00 64 21 2 66 2.94 68 22 0 65 0.00 65 23 1 53 1.85 54 24 1 54 1.82 55 25 0 66 0.00 66 26 2 50 3.85 52 27 1 55 1.79 56 28 0 47 0.00 47 29 0 42 0.00 42 30 0 47 0.00 47 31 0 59 0.00 59 32 0 42 0.00 42 33 0 54 0.00 54 34 0 48 0.00 48 35 0 52 0.00 52 36 1 49 2.00 50 37 0 50 0.00 50 38 2 46 4.17 48 39 0 40 0.00 40 40 0 38 0.00 38 41 0 39 0.00 39 42 0 22 0.00 22 43 0 39 0.00 39 44 0 41 0.00 41 45 2 43 4.44 45 46 0 38 0.00 38 47 0 42 0.00 42 48 0 35 0.00 35 49 0 28 0.00 28 50 0 24 0.00 24 51 1 27 3.57 28 52 2 34 5.56 36 53 0 38 0.00 38 54 0 29 0.00 29 55 3 32 8.57 35 56 1 33 2.94 34 57 0 29 0.00 29 58 1 25 3.85 26 59 2 29 6.45 31 60 0 26 0.00 26 61 0 18 0.00 18 62 0 27 0.00 27 63 0 24 0.00 24 64 1 21 4.55 22 65 0 23 0.00 23 66 0 30 0.00 30 67 0 26 0.00 26 68 0 27 0.00 27 69 1 21 4.55 22 70 0 20 0.00 20 71 0 14 0.00 14 72 0 16 0.00 16 73 1 24 4.00 25 74 0 18 0.00 18 75 0 10 0.00 10 76 0 22 0.00 22 77 1 15 6.25 16 78 0 15 0.00 15 79 0 10 0.00 10 80 0 4 0.00 4