Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_8_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_8_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 1802
Pairs without alignments under any condition 7180
Pairs that did not map uniquely 1018
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 47295
Methylated C's in CpG context 4577
Methylated C's in CHG context 155
Methylated C's in CHH context 650
Methylated C's in Unknown context 0
Unmethylated C's in CpG context 1539
Unmethylated C's in CHG context 10803
Unmethylated C's in CHH context 29571
Unmethylated C's in Unknown context 33
Percentage methylation (CpG context) 74.8%
Percentage methylation (CHG context) 1.4%
Percentage methylation (CHH context) 2.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 464 original top strand
CTOT 452 complementary to original top strand
CTOB 433 complementary to original bottom strand
OB 453 original bottom strand