zr2096_7_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 1930 lines in total Total number of methylation call strings processed: 3860 Final Cytosine Methylation Report ================================= Total number of C's analysed: 32700 Total methylated C's in CpG context: 3415 Total methylated C's in CHG context: 123 Total methylated C's in CHH context: 329 Total C to T conversions in CpG context: 836 Total C to T conversions in CHG context: 7277 Total C to T conversions in CHH context: 20720 C methylated in CpG context: 80.3% C methylated in CHG context: 1.7% C methylated in CHH context: 1.6%