CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 34 15 69.39 49 2 33 17 66.00 50 3 53 11 82.81 64 4 35 13 72.92 48 5 41 8 83.67 49 6 41 13 75.93 54 7 43 9 82.69 52 8 39 17 69.64 56 9 46 8 85.19 54 10 38 15 71.70 53 11 46 6 88.46 52 12 33 12 73.33 45 13 40 10 80.00 50 14 50 10 83.33 60 15 43 10 81.13 53 16 41 6 87.23 47 17 45 13 77.59 58 18 39 9 81.25 48 19 39 8 82.98 47 20 50 11 81.97 61 21 34 9 79.07 43 22 37 10 78.72 47 23 40 8 83.33 48 24 50 9 84.75 59 25 41 7 85.42 48 26 32 8 80.00 40 27 46 10 82.14 56 28 49 7 87.50 56 29 38 10 79.17 48 30 39 11 78.00 50 31 36 9 80.00 45 32 34 3 91.89 37 33 41 9 82.00 50 34 41 8 83.67 49 35 31 12 72.09 43 36 31 11 73.81 42 37 41 10 80.39 51 38 46 11 80.70 57 39 43 18 70.49 61 40 34 8 80.95 42 41 35 6 85.37 41 42 44 6 88.00 50 43 35 8 81.40 43 44 35 7 83.33 42 45 32 8 80.00 40 46 33 9 78.57 42 47 37 9 80.43 46 48 36 10 78.26 46 49 40 8 83.33 48 50 37 7 84.09 44 51 40 8 83.33 48 52 33 3 91.67 36 53 37 9 80.43 46 54 27 9 75.00 36 55 34 6 85.00 40 56 33 7 82.50 40 57 36 3 92.31 39 58 23 4 85.19 27 59 28 11 71.79 39 60 32 9 78.05 41 61 24 4 85.71 28 62 24 3 88.89 27 63 24 4 85.71 28 64 33 8 80.49 41 65 21 4 84.00 25 66 30 11 73.17 41 67 22 2 91.67 24 68 33 8 80.49 41 69 26 11 70.27 37 70 24 4 85.71 28 71 30 5 85.71 35 72 19 8 70.37 27 73 18 4 81.82 22 74 24 2 92.31 26 75 33 7 82.50 40 76 21 5 80.77 26 77 19 3 86.36 22 78 15 7 68.18 22 79 14 4 77.78 18 80 10 5 66.67 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 84 3.45 87 2 2 76 2.56 78 3 2 78 2.50 80 4 3 75 3.85 78 5 3 86 3.37 89 6 2 92 2.13 94 7 1 96 1.03 97 8 1 104 0.95 105 9 0 96 0.00 96 10 0 75 0.00 75 11 0 108 0.00 108 12 2 82 2.38 84 13 2 79 2.47 81 14 2 77 2.53 79 15 3 79 3.66 82 16 1 89 1.11 90 17 2 91 2.15 93 18 2 99 1.98 101 19 1 87 1.14 88 20 1 76 1.30 77 21 1 80 1.23 81 22 3 85 3.41 88 23 1 84 1.18 85 24 0 93 0.00 93 25 2 80 2.44 82 26 1 93 1.06 94 27 2 64 3.03 66 28 0 100 0.00 100 29 0 89 0.00 89 30 2 83 2.35 85 31 2 89 2.20 91 32 1 94 1.05 95 33 2 75 2.60 77 34 2 92 2.13 94 35 1 73 1.35 74 36 2 71 2.74 73 37 2 90 2.17 92 38 0 85 0.00 85 39 0 69 0.00 69 40 2 95 2.06 97 41 1 83 1.19 84 42 0 74 0.00 74 43 2 72 2.70 74 44 1 78 1.27 79 45 1 84 1.18 85 46 2 79 2.47 81 47 0 61 0.00 61 48 3 65 4.41 68 49 0 69 0.00 69 50 0 86 0.00 86 51 1 66 1.49 67 52 1 85 1.16 86 53 2 73 2.67 75 54 1 86 1.15 87 55 1 72 1.37 73 56 0 62 0.00 62 57 0 73 0.00 73 58 0 70 0.00 70 59 3 62 4.62 65 60 0 53 0.00 53 61 3 65 4.41 68 62 1 51 1.92 52 63 1 75 1.32 76 64 0 57 0.00 57 65 0 46 0.00 46 66 2 42 4.55 44 67 0 56 0.00 56 68 2 51 3.77 53 69 3 58 4.92 61 70 0 44 0.00 44 71 0 47 0.00 47 72 0 55 0.00 55 73 0 55 0.00 55 74 0 52 0.00 52 75 2 49 3.92 51 76 1 45 2.17 46 77 0 56 0.00 56 78 0 36 0.00 36 79 1 47 2.08 48 80 0 12 0.00 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 233 3.32 241 2 7 261 2.61 268 3 3 269 1.10 272 4 4 244 1.61 248 5 2 253 0.78 255 6 3 261 1.14 264 7 6 225 2.60 231 8 3 258 1.15 261 9 5 231 2.12 236 10 3 254 1.17 257 11 8 239 3.24 247 12 5 234 2.09 239 13 3 248 1.20 251 14 4 240 1.64 244 15 5 234 2.09 239 16 6 225 2.60 231 17 4 233 1.69 237 18 4 264 1.49 268 19 4 262 1.50 266 20 6 262 2.24 268 21 4 264 1.49 268 22 4 256 1.54 260 23 5 233 2.10 238 24 5 252 1.95 257 25 2 265 0.75 267 26 5 228 2.15 233 27 4 247 1.59 251 28 5 227 2.16 232 29 6 240 2.44 246 30 3 209 1.42 212 31 1 218 0.46 219 32 4 197 1.99 201 33 6 218 2.68 224 34 7 211 3.21 218 35 4 236 1.67 240 36 5 228 2.15 233 37 2 212 0.93 214 38 4 215 1.83 219 39 4 199 1.97 203 40 4 190 2.06 194 41 2 225 0.88 227 42 3 203 1.46 206 43 4 208 1.89 212 44 3 206 1.44 209 45 6 201 2.90 207 46 2 222 0.89 224 47 3 190 1.55 193 48 1 197 0.51 198 49 2 198 1.00 200 50 4 188 2.08 192 51 4 215 1.83 219 52 4 193 2.03 197 53 1 200 0.50 201 54 3 178 1.66 181 55 1 188 0.53 189 56 6 166 3.49 172 57 2 170 1.16 172 58 0 187 0.00 187 59 2 193 1.03 195 60 7 201 3.37 208 61 2 171 1.16 173 62 1 159 0.62 160 63 5 167 2.91 172 64 7 168 4.00 175 65 0 174 0.00 174 66 4 172 2.27 176 67 3 156 1.89 159 68 2 164 1.20 166 69 3 154 1.91 157 70 1 160 0.62 161 71 1 156 0.64 157 72 1 150 0.66 151 73 0 145 0.00 145 74 4 155 2.52 159 75 2 135 1.46 137 76 1 130 0.76 131 77 1 135 0.74 136 78 0 129 0.00 129 79 1 85 1.16 86 80 0 41 0.00 41 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24 8 75.00 32 2 21 5 80.77 26 3 17 4 80.95 21 4 16 3 84.21 19 5 18 4 81.82 22 6 18 3 85.71 21 7 13 5 72.22 18 8 16 5 76.19 21 9 10 9 52.63 19 10 11 7 61.11 18 11 13 4 76.47 17 12 18 4 81.82 22 13 8 3 72.73 11 14 11 2 84.62 13 15 20 3 86.96 23 16 11 1 91.67 12 17 9 4 69.23 13 18 13 2 86.67 15 19 13 4 76.47 17 20 9 6 60.00 15 21 12 2 85.71 14 22 11 0 100.00 11 23 9 2 81.82 11 24 6 0 100.00 6 25 12 6 66.67 18 26 12 3 80.00 15 27 6 1 85.71 7 28 14 0 100.00 14 29 13 2 86.67 15 30 9 3 75.00 12 31 10 0 100.00 10 32 5 1 83.33 6 33 10 1 90.91 11 34 8 1 88.89 9 35 13 0 100.00 13 36 3 3 50.00 6 37 12 0 100.00 12 38 3 1 75.00 4 39 8 3 72.73 11 40 7 2 77.78 9 41 9 0 100.00 9 42 10 1 90.91 11 43 4 2 66.67 6 44 9 1 90.00 10 45 6 1 85.71 7 46 8 1 88.89 9 47 5 0 100.00 5 48 10 4 71.43 14 49 11 4 73.33 15 50 6 4 60.00 10 51 2 1 66.67 3 52 7 1 87.50 8 53 5 2 71.43 7 54 4 1 80.00 5 55 5 1 83.33 6 56 6 4 60.00 10 57 2 0 100.00 2 58 3 2 60.00 5 59 4 4 50.00 8 60 5 0 100.00 5 61 7 0 100.00 7 62 3 1 75.00 4 63 3 1 75.00 4 64 0 0 0 65 2 1 66.67 3 66 5 2 71.43 7 67 2 1 66.67 3 68 7 4 63.64 11 69 1 2 33.33 3 70 3 1 75.00 4 71 6 0 100.00 6 72 3 0 100.00 3 73 4 1 80.00 5 74 2 0 100.00 2 75 2 1 66.67 3 76 2 0 100.00 2 77 2 1 66.67 3 78 4 3 57.14 7 79 0 1 0.00 1 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 67 1.47 68 2 2 37 5.13 39 3 1 36 2.70 37 4 0 29 0.00 29 5 1 35 2.78 36 6 0 24 0.00 24 7 1 40 2.44 41 8 0 36 0.00 36 9 0 37 0.00 37 10 0 33 0.00 33 11 2 31 6.06 33 12 1 30 3.23 31 13 0 29 0.00 29 14 0 24 0.00 24 15 1 31 3.12 32 16 0 36 0.00 36 17 1 26 3.70 27 18 0 30 0.00 30 19 1 20 4.76 21 20 1 27 3.57 28 21 0 18 0.00 18 22 2 30 6.25 32 23 2 22 8.33 24 24 0 23 0.00 23 25 1 21 4.55 22 26 0 20 0.00 20 27 0 17 0.00 17 28 0 14 0.00 14 29 0 22 0.00 22 30 0 19 0.00 19 31 0 20 0.00 20 32 3 12 20.00 15 33 0 18 0.00 18 34 0 24 0.00 24 35 1 22 4.35 23 36 0 16 0.00 16 37 0 13 0.00 13 38 0 20 0.00 20 39 0 13 0.00 13 40 1 15 6.25 16 41 1 16 5.88 17 42 0 11 0.00 11 43 0 10 0.00 10 44 0 14 0.00 14 45 0 12 0.00 12 46 1 21 4.55 22 47 1 13 7.14 14 48 0 12 0.00 12 49 0 16 0.00 16 50 1 10 9.09 11 51 0 9 0.00 9 52 0 12 0.00 12 53 0 8 0.00 8 54 0 13 0.00 13 55 0 13 0.00 13 56 0 14 0.00 14 57 0 12 0.00 12 58 0 13 0.00 13 59 0 8 0.00 8 60 0 8 0.00 8 61 0 9 0.00 9 62 0 9 0.00 9 63 0 5 0.00 5 64 1 6 14.29 7 65 0 7 0.00 7 66 0 8 0.00 8 67 0 10 0.00 10 68 1 8 11.11 9 69 0 7 0.00 7 70 0 9 0.00 9 71 0 5 0.00 5 72 0 5 0.00 5 73 0 3 0.00 3 74 0 6 0.00 6 75 0 6 0.00 6 76 0 7 0.00 7 77 0 6 0.00 6 78 0 5 0.00 5 79 0 7 0.00 7 80 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 170 1.16 172 2 3 137 2.14 140 3 1 132 0.75 133 4 2 145 1.36 147 5 1 106 0.93 107 6 4 118 3.28 122 7 2 111 1.77 113 8 3 108 2.70 111 9 3 116 2.52 119 10 1 97 1.02 98 11 1 93 1.06 94 12 0 100 0.00 100 13 2 72 2.70 74 14 0 74 0.00 74 15 0 91 0.00 91 16 0 95 0.00 95 17 1 85 1.16 86 18 1 93 1.06 94 19 1 83 1.19 84 20 2 81 2.41 83 21 0 79 0.00 79 22 2 71 2.74 73 23 1 61 1.61 62 24 0 84 0.00 84 25 2 65 2.99 67 26 0 72 0.00 72 27 2 71 2.74 73 28 0 55 0.00 55 29 0 48 0.00 48 30 0 61 0.00 61 31 0 60 0.00 60 32 1 69 1.43 70 33 1 54 1.82 55 34 0 42 0.00 42 35 0 38 0.00 38 36 0 57 0.00 57 37 1 44 2.22 45 38 0 48 0.00 48 39 1 59 1.67 60 40 1 55 1.79 56 41 0 47 0.00 47 42 1 36 2.70 37 43 0 43 0.00 43 44 0 39 0.00 39 45 0 39 0.00 39 46 0 36 0.00 36 47 1 40 2.44 41 48 0 29 0.00 29 49 1 28 3.45 29 50 0 35 0.00 35 51 0 35 0.00 35 52 0 31 0.00 31 53 0 27 0.00 27 54 0 30 0.00 30 55 1 28 3.45 29 56 0 29 0.00 29 57 0 29 0.00 29 58 0 26 0.00 26 59 1 31 3.12 32 60 0 26 0.00 26 61 0 32 0.00 32 62 0 27 0.00 27 63 0 37 0.00 37 64 1 27 3.57 28 65 1 27 3.57 28 66 1 28 3.45 29 67 0 16 0.00 16 68 0 24 0.00 24 69 1 18 5.26 19 70 0 19 0.00 19 71 0 20 0.00 20 72 1 25 3.85 26 73 0 24 0.00 24 74 0 14 0.00 14 75 0 21 0.00 21 76 0 23 0.00 23 77 0 18 0.00 18 78 1 15 6.25 16 79 0 16 0.00 16 80 0 15 0.00 15