Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 1930
Pairs without alignments under any condition 7046
Pairs that did not map uniquely 1024
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 51903
Methylated C's in CpG context 5479
Methylated C's in CHG context 190
Methylated C's in CHH context 543
Methylated C's in Unknown context 3
Unmethylated C's in CpG context 1329
Unmethylated C's in CHG context 11633
Unmethylated C's in CHH context 32729
Unmethylated C's in Unknown context 48
Percentage methylation (CpG context) 80.5%
Percentage methylation (CHG context) 1.6%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 510 original top strand
CTOT 462 complementary to original top strand
CTOB 471 complementary to original bottom strand
OB 487 original bottom strand