CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 46 7 86.79 53 2 54 7 88.52 61 3 55 10 84.62 65 4 51 10 83.61 61 5 50 13 79.37 63 6 49 15 76.56 64 7 54 8 87.10 62 8 57 10 85.07 67 9 46 12 79.31 58 10 49 15 76.56 64 11 42 13 76.36 55 12 67 7 90.54 74 13 44 22 66.67 66 14 52 13 80.00 65 15 45 12 78.95 57 16 63 6 91.30 69 17 49 8 85.96 57 18 58 15 79.45 73 19 59 12 83.10 71 20 57 9 86.36 66 21 51 12 80.95 63 22 62 11 84.93 73 23 45 11 80.36 56 24 59 9 86.76 68 25 58 10 85.29 68 26 45 9 83.33 54 27 44 14 75.86 58 28 46 11 80.70 57 29 51 19 72.86 70 30 50 11 81.97 61 31 49 8 85.96 57 32 44 15 74.58 59 33 41 5 89.13 46 34 44 13 77.19 57 35 49 7 87.50 56 36 53 16 76.81 69 37 56 7 88.89 63 38 50 10 83.33 60 39 48 10 82.76 58 40 44 6 88.00 50 41 42 9 82.35 51 42 48 9 84.21 57 43 51 9 85.00 60 44 46 8 85.19 54 45 42 12 77.78 54 46 37 7 84.09 44 47 42 9 82.35 51 48 35 9 79.55 44 49 40 3 93.02 43 50 44 10 81.48 54 51 34 11 75.56 45 52 41 9 82.00 50 53 42 9 82.35 51 54 28 3 90.32 31 55 35 8 81.40 43 56 37 6 86.05 43 57 27 4 87.10 31 58 25 7 78.12 32 59 46 4 92.00 50 60 30 5 85.71 35 61 42 4 91.30 46 62 31 2 93.94 33 63 31 9 77.50 40 64 31 10 75.61 41 65 25 6 80.65 31 66 26 6 81.25 32 67 20 5 80.00 25 68 22 8 73.33 30 69 30 3 90.91 33 70 28 5 84.85 33 71 28 6 82.35 34 72 36 4 90.00 40 73 28 7 80.00 35 74 23 7 76.67 30 75 24 4 85.71 28 76 35 5 87.50 40 77 23 4 85.19 27 78 25 1 96.15 26 79 10 4 71.43 14 80 12 0 100.00 12 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 93 3.12 96 2 0 80 0.00 80 3 1 89 1.11 90 4 2 101 1.94 103 5 2 99 1.98 101 6 0 106 0.00 106 7 0 127 0.00 127 8 0 97 0.00 97 9 1 106 0.93 107 10 2 105 1.87 107 11 0 85 0.00 85 12 1 83 1.19 84 13 1 111 0.89 112 14 0 111 0.00 111 15 0 84 0.00 84 16 0 98 0.00 98 17 0 132 0.00 132 18 0 98 0.00 98 19 3 99 2.94 102 20 3 105 2.78 108 21 0 97 0.00 97 22 1 104 0.95 105 23 3 92 3.16 95 24 0 93 0.00 93 25 1 106 0.93 107 26 2 120 1.64 122 27 1 96 1.03 97 28 0 93 0.00 93 29 1 90 1.10 91 30 0 113 0.00 113 31 1 110 0.90 111 32 0 89 0.00 89 33 2 102 1.92 104 34 1 99 1.00 100 35 2 98 2.00 100 36 0 95 0.00 95 37 0 85 0.00 85 38 1 93 1.06 94 39 1 84 1.18 85 40 1 102 0.97 103 41 0 84 0.00 84 42 0 90 0.00 90 43 2 78 2.50 80 44 0 90 0.00 90 45 1 85 1.16 86 46 0 88 0.00 88 47 0 91 0.00 91 48 0 74 0.00 74 49 2 84 2.33 86 50 2 63 3.08 65 51 0 92 0.00 92 52 0 71 0.00 71 53 3 70 4.11 73 54 2 69 2.82 71 55 2 53 3.64 55 56 0 69 0.00 69 57 2 77 2.53 79 58 0 54 0.00 54 59 0 69 0.00 69 60 0 72 0.00 72 61 2 62 3.12 64 62 1 69 1.43 70 63 3 66 4.35 69 64 2 42 4.55 44 65 0 60 0.00 60 66 1 59 1.67 60 67 1 50 1.96 51 68 0 62 0.00 62 69 0 52 0.00 52 70 1 44 2.22 45 71 1 49 2.00 50 72 2 47 4.08 49 73 0 52 0.00 52 74 2 44 4.35 46 75 0 47 0.00 47 76 0 33 0.00 33 77 0 43 0.00 43 78 0 38 0.00 38 79 0 34 0.00 34 80 0 13 0.00 13 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 259 1.89 264 2 4 280 1.41 284 3 7 285 2.40 292 4 5 269 1.82 274 5 7 242 2.81 249 6 4 267 1.48 271 7 5 265 1.85 270 8 5 264 1.86 269 9 4 255 1.54 259 10 4 256 1.54 260 11 11 285 3.72 296 12 3 272 1.09 275 13 1 265 0.38 266 14 6 255 2.30 261 15 9 255 3.41 264 16 5 272 1.81 277 17 4 247 1.59 251 18 6 245 2.39 251 19 5 256 1.92 261 20 4 260 1.52 264 21 2 277 0.72 279 22 9 249 3.49 258 23 7 285 2.40 292 24 4 253 1.56 257 25 5 258 1.90 263 26 7 239 2.85 246 27 1 269 0.37 270 28 3 289 1.03 292 29 4 250 1.57 254 30 8 253 3.07 261 31 6 281 2.09 287 32 3 243 1.22 246 33 5 262 1.87 267 34 5 273 1.80 278 35 3 224 1.32 227 36 5 250 1.96 255 37 1 236 0.42 237 38 6 233 2.51 239 39 2 240 0.83 242 40 1 236 0.42 237 41 5 254 1.93 259 42 3 241 1.23 244 43 5 231 2.12 236 44 6 199 2.93 205 45 1 217 0.46 218 46 3 224 1.32 227 47 7 212 3.20 219 48 3 235 1.26 238 49 3 232 1.28 235 50 5 225 2.17 230 51 3 210 1.41 213 52 2 217 0.91 219 53 3 200 1.48 203 54 1 192 0.52 193 55 3 179 1.65 182 56 4 180 2.17 184 57 2 198 1.00 200 58 5 183 2.66 188 59 1 192 0.52 193 60 1 194 0.51 195 61 1 190 0.52 191 62 2 154 1.28 156 63 3 189 1.56 192 64 1 171 0.58 172 65 3 157 1.88 160 66 1 173 0.57 174 67 3 145 2.03 148 68 2 146 1.35 148 69 1 149 0.67 150 70 0 137 0.00 137 71 2 146 1.35 148 72 2 135 1.46 137 73 0 113 0.00 113 74 2 121 1.63 123 75 1 140 0.71 141 76 0 127 0.00 127 77 3 100 2.91 103 78 1 105 0.94 106 79 0 76 0.00 76 80 1 52 1.89 53 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28 6 82.35 34 2 24 6 80.00 30 3 26 8 76.47 34 4 20 7 74.07 27 5 13 4 76.47 17 6 11 2 84.62 13 7 13 4 76.47 17 8 18 4 81.82 22 9 17 2 89.47 19 10 16 3 84.21 19 11 22 6 78.57 28 12 21 2 91.30 23 13 10 5 66.67 15 14 12 0 100.00 12 15 19 3 86.36 22 16 11 4 73.33 15 17 14 5 73.68 19 18 18 4 81.82 22 19 8 3 72.73 11 20 10 1 90.91 11 21 13 3 81.25 16 22 10 3 76.92 13 23 12 3 80.00 15 24 6 2 75.00 8 25 11 3 78.57 14 26 9 4 69.23 13 27 4 1 80.00 5 28 14 1 93.33 15 29 10 1 90.91 11 30 6 0 100.00 6 31 7 1 87.50 8 32 5 3 62.50 8 33 9 4 69.23 13 34 10 2 83.33 12 35 7 2 77.78 9 36 5 2 71.43 7 37 5 1 83.33 6 38 12 0 100.00 12 39 5 0 100.00 5 40 10 1 90.91 11 41 7 0 100.00 7 42 3 2 60.00 5 43 3 2 60.00 5 44 7 1 87.50 8 45 7 0 100.00 7 46 9 1 90.00 10 47 5 0 100.00 5 48 3 1 75.00 4 49 4 3 57.14 7 50 6 3 66.67 9 51 0 0 0 52 3 1 75.00 4 53 3 0 100.00 3 54 3 1 75.00 4 55 5 1 83.33 6 56 6 1 85.71 7 57 2 0 100.00 2 58 5 0 100.00 5 59 1 0 100.00 1 60 1 0 100.00 1 61 5 2 71.43 7 62 0 1 0.00 1 63 2 0 100.00 2 64 2 0 100.00 2 65 3 0 100.00 3 66 3 0 100.00 3 67 2 2 50.00 4 68 1 1 50.00 2 69 1 0 100.00 1 70 3 0 100.00 3 71 4 0 100.00 4 72 0 0 0 73 0 0 0 74 1 0 100.00 1 75 0 1 0.00 1 76 3 0 100.00 3 77 1 0 100.00 1 78 0 0 0 79 2 2 50.00 4 80 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 58 4.92 61 2 3 51 5.56 54 3 1 53 1.85 54 4 0 44 0.00 44 5 1 44 2.22 45 6 1 30 3.23 31 7 0 35 0.00 35 8 1 30 3.23 31 9 0 41 0.00 41 10 0 39 0.00 39 11 1 29 3.33 30 12 1 35 2.78 36 13 1 31 3.12 32 14 1 27 3.57 28 15 0 31 0.00 31 16 0 28 0.00 28 17 1 23 4.17 24 18 1 29 3.33 30 19 0 19 0.00 19 20 0 33 0.00 33 21 0 17 0.00 17 22 0 18 0.00 18 23 1 28 3.45 29 24 0 13 0.00 13 25 0 28 0.00 28 26 1 22 4.35 23 27 0 17 0.00 17 28 0 17 0.00 17 29 0 15 0.00 15 30 0 14 0.00 14 31 0 18 0.00 18 32 1 19 5.00 20 33 0 12 0.00 12 34 0 9 0.00 9 35 1 14 6.67 15 36 0 15 0.00 15 37 0 19 0.00 19 38 0 11 0.00 11 39 0 12 0.00 12 40 0 10 0.00 10 41 0 11 0.00 11 42 0 9 0.00 9 43 0 8 0.00 8 44 0 13 0.00 13 45 0 9 0.00 9 46 1 9 10.00 10 47 0 13 0.00 13 48 0 9 0.00 9 49 0 11 0.00 11 50 0 11 0.00 11 51 0 9 0.00 9 52 0 11 0.00 11 53 0 10 0.00 10 54 0 6 0.00 6 55 0 2 0.00 2 56 0 9 0.00 9 57 0 13 0.00 13 58 0 8 0.00 8 59 0 7 0.00 7 60 0 8 0.00 8 61 0 3 0.00 3 62 1 8 11.11 9 63 0 11 0.00 11 64 0 8 0.00 8 65 0 4 0.00 4 66 0 5 0.00 5 67 0 8 0.00 8 68 0 5 0.00 5 69 0 6 0.00 6 70 0 4 0.00 4 71 0 1 0.00 1 72 0 3 0.00 3 73 0 7 0.00 7 74 0 1 0.00 1 75 0 5 0.00 5 76 0 3 0.00 3 77 0 4 0.00 4 78 0 4 0.00 4 79 0 3 0.00 3 80 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 204 1.45 207 2 2 128 1.54 130 3 5 129 3.73 134 4 0 100 0.00 100 5 1 96 1.03 97 6 3 105 2.78 108 7 0 94 0.00 94 8 0 85 0.00 85 9 0 94 0.00 94 10 2 95 2.06 97 11 0 81 0.00 81 12 1 66 1.49 67 13 1 92 1.08 93 14 1 62 1.59 63 15 0 75 0.00 75 16 1 77 1.28 78 17 0 83 0.00 83 18 0 64 0.00 64 19 0 76 0.00 76 20 0 62 0.00 62 21 1 63 1.56 64 22 1 64 1.54 65 23 0 55 0.00 55 24 0 70 0.00 70 25 1 64 1.54 65 26 1 61 1.61 62 27 0 58 0.00 58 28 0 46 0.00 46 29 2 50 3.85 52 30 0 54 0.00 54 31 0 68 0.00 68 32 0 47 0.00 47 33 0 48 0.00 48 34 0 40 0.00 40 35 0 33 0.00 33 36 0 33 0.00 33 37 0 33 0.00 33 38 0 30 0.00 30 39 0 39 0.00 39 40 1 40 2.44 41 41 0 28 0.00 28 42 0 38 0.00 38 43 0 26 0.00 26 44 0 23 0.00 23 45 1 37 2.63 38 46 0 29 0.00 29 47 1 36 2.70 37 48 0 28 0.00 28 49 0 30 0.00 30 50 0 41 0.00 41 51 1 24 4.00 25 52 1 30 3.23 31 53 0 36 0.00 36 54 0 24 0.00 24 55 1 28 3.45 29 56 0 25 0.00 25 57 0 21 0.00 21 58 1 16 5.88 17 59 0 20 0.00 20 60 1 18 5.26 19 61 1 22 4.35 23 62 0 21 0.00 21 63 0 23 0.00 23 64 0 25 0.00 25 65 0 22 0.00 22 66 0 19 0.00 19 67 0 15 0.00 15 68 0 18 0.00 18 69 0 17 0.00 17 70 0 16 0.00 16 71 0 18 0.00 18 72 0 19 0.00 19 73 0 12 0.00 12 74 0 14 0.00 14 75 0 12 0.00 12 76 3 15 16.67 18 77 0 15 0.00 15 78 1 12 7.69 13 79 0 10 0.00 10 80 0 11 0.00 11