Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_6_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_6_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 2184
Pairs without alignments under any condition 6549
Pairs that did not map uniquely 1267
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 56488
Methylated C's in CpG context 6634
Methylated C's in CHG context 140
Methylated C's in CHH context 556
Methylated C's in Unknown context 0
Unmethylated C's in CpG context 1406
Unmethylated C's in CHG context 13018
Unmethylated C's in CHH context 34734
Unmethylated C's in Unknown context 26
Percentage methylation (CpG context) 82.5%
Percentage methylation (CHG context) 1.1%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 591 original top strand
CTOT 498 complementary to original top strand
CTOB 489 complementary to original bottom strand
OB 606 original bottom strand