CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 40 15 72.73 55 2 37 13 74.00 50 3 49 11 81.67 60 4 35 17 67.31 52 5 39 10 79.59 49 6 43 12 78.18 55 7 53 14 79.10 67 8 33 20 62.26 53 9 39 13 75.00 52 10 45 13 77.59 58 11 44 16 73.33 60 12 52 7 88.14 59 13 37 14 72.55 51 14 41 12 77.36 53 15 56 18 75.68 74 16 45 9 83.33 54 17 34 18 65.38 52 18 43 17 71.67 60 19 38 13 74.51 51 20 42 15 73.68 57 21 41 19 68.33 60 22 47 15 75.81 62 23 34 13 72.34 47 24 35 11 76.09 46 25 50 13 79.37 63 26 38 17 69.09 55 27 42 13 76.36 55 28 36 17 67.92 53 29 30 13 69.77 43 30 33 15 68.75 48 31 38 16 70.37 54 32 44 16 73.33 60 33 40 14 74.07 54 34 32 12 72.73 44 35 58 14 80.56 72 36 37 14 72.55 51 37 37 12 75.51 49 38 37 12 75.51 49 39 43 9 82.69 52 40 31 8 79.49 39 41 46 6 88.46 52 42 42 8 84.00 50 43 39 10 79.59 49 44 42 12 77.78 54 45 23 13 63.89 36 46 40 12 76.92 52 47 28 16 63.64 44 48 36 10 78.26 46 49 41 10 80.39 51 50 24 7 77.42 31 51 38 5 88.37 43 52 35 10 77.78 45 53 36 5 87.80 41 54 42 9 82.35 51 55 37 10 78.72 47 56 27 17 61.36 44 57 24 10 70.59 34 58 34 9 79.07 43 59 20 10 66.67 30 60 25 13 65.79 38 61 22 7 75.86 29 62 31 7 81.58 38 63 27 9 75.00 36 64 25 6 80.65 31 65 24 7 77.42 31 66 30 4 88.24 34 67 24 11 68.57 35 68 24 2 92.31 26 69 25 6 80.65 31 70 38 15 71.70 53 71 23 5 82.14 28 72 20 7 74.07 27 73 18 6 75.00 24 74 17 6 73.91 23 75 20 3 86.96 23 76 12 10 54.55 22 77 21 7 75.00 28 78 19 4 82.61 23 79 20 8 71.43 28 80 3 2 60.00 5 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 95 1.04 96 2 0 84 0.00 84 3 3 80 3.61 83 4 1 94 1.05 95 5 0 88 0.00 88 6 2 89 2.20 91 7 1 97 1.02 98 8 2 83 2.35 85 9 0 82 0.00 82 10 0 91 0.00 91 11 2 92 2.13 94 12 2 75 2.60 77 13 5 99 4.81 104 14 1 94 1.05 95 15 4 107 3.60 111 16 5 83 5.68 88 17 3 90 3.23 93 18 1 101 0.98 102 19 2 77 2.53 79 20 2 83 2.35 85 21 3 95 3.06 98 22 1 110 0.90 111 23 0 117 0.00 117 24 2 83 2.35 85 25 1 95 1.04 96 26 0 83 0.00 83 27 2 94 2.08 96 28 1 92 1.08 93 29 1 80 1.23 81 30 1 86 1.15 87 31 3 77 3.75 80 32 2 87 2.25 89 33 2 93 2.11 95 34 2 89 2.20 91 35 1 90 1.10 91 36 1 82 1.20 83 37 3 95 3.06 98 38 1 77 1.28 78 39 1 77 1.28 78 40 1 80 1.23 81 41 3 77 3.75 80 42 2 86 2.27 88 43 3 71 4.05 74 44 2 77 2.53 79 45 0 87 0.00 87 46 1 76 1.30 77 47 0 81 0.00 81 48 2 74 2.63 76 49 1 73 1.35 74 50 0 75 0.00 75 51 1 77 1.28 78 52 2 69 2.82 71 53 2 74 2.63 76 54 2 74 2.63 76 55 0 70 0.00 70 56 1 71 1.39 72 57 1 65 1.52 66 58 1 55 1.79 56 59 1 55 1.79 56 60 0 61 0.00 61 61 0 66 0.00 66 62 2 60 3.23 62 63 2 55 3.51 57 64 1 43 2.27 44 65 1 50 1.96 51 66 0 55 0.00 55 67 1 60 1.64 61 68 2 56 3.45 58 69 1 70 1.41 71 70 0 40 0.00 40 71 0 62 0.00 62 72 0 63 0.00 63 73 0 46 0.00 46 74 1 43 2.27 44 75 0 41 0.00 41 76 0 54 0.00 54 77 0 24 0.00 24 78 2 38 5.00 40 79 1 30 3.23 31 80 0 22 0.00 22 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 285 2.06 291 2 8 256 3.03 264 3 5 295 1.67 300 4 4 259 1.52 263 5 2 255 0.78 257 6 5 263 1.87 268 7 3 243 1.22 246 8 7 249 2.73 256 9 2 252 0.79 254 10 4 226 1.74 230 11 3 269 1.10 272 12 7 254 2.68 261 13 3 241 1.23 244 14 3 245 1.21 248 15 8 260 2.99 268 16 7 277 2.46 284 17 3 283 1.05 286 18 3 241 1.23 244 19 1 271 0.37 272 20 4 234 1.68 238 21 5 277 1.77 282 22 1 268 0.37 269 23 8 260 2.99 268 24 4 225 1.75 229 25 2 232 0.85 234 26 5 234 2.09 239 27 3 233 1.27 236 28 5 257 1.91 262 29 6 260 2.26 266 30 7 242 2.81 249 31 3 256 1.16 259 32 5 249 1.97 254 33 4 246 1.60 250 34 4 234 1.68 238 35 3 224 1.32 227 36 0 239 0.00 239 37 0 246 0.00 246 38 4 231 1.70 235 39 6 240 2.44 246 40 5 224 2.18 229 41 6 206 2.83 212 42 1 231 0.43 232 43 2 226 0.88 228 44 2 226 0.88 228 45 3 226 1.31 229 46 3 207 1.43 210 47 0 217 0.00 217 48 4 227 1.73 231 49 2 224 0.88 226 50 3 201 1.47 204 51 0 217 0.00 217 52 4 206 1.90 210 53 1 196 0.51 197 54 6 207 2.82 213 55 3 174 1.69 177 56 3 198 1.49 201 57 3 175 1.69 178 58 6 208 2.80 214 59 6 180 3.23 186 60 4 187 2.09 191 61 2 168 1.18 170 62 0 174 0.00 174 63 3 191 1.55 194 64 3 176 1.68 179 65 2 194 1.02 196 66 2 143 1.38 145 67 4 150 2.60 154 68 2 169 1.17 171 69 2 158 1.25 160 70 0 127 0.00 127 71 2 136 1.45 138 72 1 150 0.66 151 73 3 141 2.08 144 74 0 145 0.00 145 75 1 145 0.68 146 76 0 116 0.00 116 77 0 117 0.00 117 78 2 107 1.83 109 79 1 89 1.11 90 80 1 48 2.04 49 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19 9 67.86 28 2 26 10 72.22 36 3 16 2 88.89 18 4 12 8 60.00 20 5 15 4 78.95 19 6 18 2 90.00 20 7 14 3 82.35 17 8 15 2 88.24 17 9 8 10 44.44 18 10 10 4 71.43 14 11 18 6 75.00 24 12 14 4 77.78 18 13 9 6 60.00 15 14 18 5 78.26 23 15 11 4 73.33 15 16 14 4 77.78 18 17 14 1 93.33 15 18 9 2 81.82 11 19 18 4 81.82 22 20 12 2 85.71 14 21 11 7 61.11 18 22 13 5 72.22 18 23 9 1 90.00 10 24 13 3 81.25 16 25 9 2 81.82 11 26 20 6 76.92 26 27 12 3 80.00 15 28 10 5 66.67 15 29 12 4 75.00 16 30 6 6 50.00 12 31 5 2 71.43 7 32 10 3 76.92 13 33 8 3 72.73 11 34 4 5 44.44 9 35 6 2 75.00 8 36 7 0 100.00 7 37 5 5 50.00 10 38 6 3 66.67 9 39 6 2 75.00 8 40 3 4 42.86 7 41 4 2 66.67 6 42 5 1 83.33 6 43 7 2 77.78 9 44 4 4 50.00 8 45 6 2 75.00 8 46 6 6 50.00 12 47 3 2 60.00 5 48 7 0 100.00 7 49 3 3 50.00 6 50 6 1 85.71 7 51 5 3 62.50 8 52 1 1 50.00 2 53 7 2 77.78 9 54 3 0 100.00 3 55 8 1 88.89 9 56 6 0 100.00 6 57 2 1 66.67 3 58 6 0 100.00 6 59 0 0 0 60 4 1 80.00 5 61 3 0 100.00 3 62 2 0 100.00 2 63 6 1 85.71 7 64 5 3 62.50 8 65 4 0 100.00 4 66 2 1 66.67 3 67 2 0 100.00 2 68 3 0 100.00 3 69 3 2 60.00 5 70 1 2 33.33 3 71 6 0 100.00 6 72 3 1 75.00 4 73 1 1 50.00 2 74 1 1 50.00 2 75 0 0 0 76 4 0 100.00 4 77 4 1 80.00 5 78 2 0 100.00 2 79 1 0 100.00 1 80 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 63 3.08 65 2 0 43 0.00 43 3 2 35 5.41 37 4 0 34 0.00 34 5 1 31 3.12 32 6 2 41 4.65 43 7 0 43 0.00 43 8 0 35 0.00 35 9 1 33 2.94 34 10 0 27 0.00 27 11 1 33 2.94 34 12 0 25 0.00 25 13 1 28 3.45 29 14 0 36 0.00 36 15 0 27 0.00 27 16 0 27 0.00 27 17 0 27 0.00 27 18 0 30 0.00 30 19 0 26 0.00 26 20 0 30 0.00 30 21 0 17 0.00 17 22 0 23 0.00 23 23 0 27 0.00 27 24 1 23 4.17 24 25 2 25 7.41 27 26 0 28 0.00 28 27 1 35 2.78 36 28 0 25 0.00 25 29 0 15 0.00 15 30 0 12 0.00 12 31 1 25 3.85 26 32 0 18 0.00 18 33 0 13 0.00 13 34 1 16 5.88 17 35 0 18 0.00 18 36 0 16 0.00 16 37 0 15 0.00 15 38 0 15 0.00 15 39 0 18 0.00 18 40 0 15 0.00 15 41 0 22 0.00 22 42 0 11 0.00 11 43 0 15 0.00 15 44 0 9 0.00 9 45 0 13 0.00 13 46 0 7 0.00 7 47 1 11 8.33 12 48 0 10 0.00 10 49 0 8 0.00 8 50 1 8 11.11 9 51 0 8 0.00 8 52 0 8 0.00 8 53 0 18 0.00 18 54 0 6 0.00 6 55 0 7 0.00 7 56 0 9 0.00 9 57 0 6 0.00 6 58 1 10 9.09 11 59 0 4 0.00 4 60 0 6 0.00 6 61 1 2 33.33 3 62 0 8 0.00 8 63 0 5 0.00 5 64 0 9 0.00 9 65 0 9 0.00 9 66 0 4 0.00 4 67 0 5 0.00 5 68 0 6 0.00 6 69 0 6 0.00 6 70 0 8 0.00 8 71 0 3 0.00 3 72 0 8 0.00 8 73 0 5 0.00 5 74 1 4 20.00 5 75 0 4 0.00 4 76 0 2 0.00 2 77 0 3 0.00 3 78 0 1 0.00 1 79 0 7 0.00 7 80 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 191 2.55 196 2 2 131 1.50 133 3 2 142 1.39 144 4 2 119 1.65 121 5 0 123 0.00 123 6 2 92 2.13 94 7 0 106 0.00 106 8 0 119 0.00 119 9 0 98 0.00 98 10 1 100 0.99 101 11 2 94 2.08 96 12 1 103 0.96 104 13 3 97 3.00 100 14 1 85 1.16 86 15 2 94 2.08 96 16 1 101 0.98 102 17 2 98 2.00 100 18 1 90 1.10 91 19 1 70 1.41 71 20 2 59 3.28 61 21 0 75 0.00 75 22 2 79 2.47 81 23 0 70 0.00 70 24 1 67 1.47 68 25 1 58 1.69 59 26 5 60 7.69 65 27 3 55 5.17 58 28 2 62 3.12 64 29 4 60 6.25 64 30 2 57 3.39 59 31 2 57 3.39 59 32 0 57 0.00 57 33 1 59 1.67 60 34 1 52 1.89 53 35 1 49 2.00 50 36 1 54 1.82 55 37 1 42 2.33 43 38 1 53 1.85 54 39 0 52 0.00 52 40 0 56 0.00 56 41 0 54 0.00 54 42 0 48 0.00 48 43 0 47 0.00 47 44 1 47 2.08 48 45 0 40 0.00 40 46 0 50 0.00 50 47 1 35 2.78 36 48 0 35 0.00 35 49 0 29 0.00 29 50 2 31 6.06 33 51 1 28 3.45 29 52 1 33 2.94 34 53 0 28 0.00 28 54 2 29 6.45 31 55 1 19 5.00 20 56 0 31 0.00 31 57 0 25 0.00 25 58 0 22 0.00 22 59 0 28 0.00 28 60 0 26 0.00 26 61 0 23 0.00 23 62 0 21 0.00 21 63 0 21 0.00 21 64 0 22 0.00 22 65 0 22 0.00 22 66 0 17 0.00 17 67 0 18 0.00 18 68 1 15 6.25 16 69 1 16 5.88 17 70 0 16 0.00 16 71 0 15 0.00 15 72 1 15 6.25 16 73 0 16 0.00 16 74 0 18 0.00 18 75 0 14 0.00 14 76 0 7 0.00 7 77 0 14 0.00 14 78 0 12 0.00 12 79 1 10 9.09 11 80 0 8 0.00 8