Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_5_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_5_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 1996
Pairs without alignments under any condition 6957
Pairs that did not map uniquely 1047
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 53972
Methylated C's in CpG context 5519
Methylated C's in CHG context 212
Methylated C's in CHH context 544
Methylated C's in Unknown context 7
Unmethylated C's in CpG context 1726
Unmethylated C's in CHG context 11983
Unmethylated C's in CHH context 33988
Unmethylated C's in Unknown context 38
Percentage methylation (CpG context) 76.2%
Percentage methylation (CHG context) 1.7%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 498 original top strand
CTOT 526 complementary to original top strand
CTOB 470 complementary to original bottom strand
OB 502 original bottom strand