CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 32 10 76.19 42 2 61 11 84.72 72 3 39 14 73.58 53 4 46 17 73.02 63 5 35 21 62.50 56 6 45 21 68.18 66 7 44 15 74.58 59 8 44 12 78.57 56 9 40 13 75.47 53 10 50 17 74.63 67 11 43 14 75.44 57 12 42 18 70.00 60 13 42 9 82.35 51 14 46 13 77.97 59 15 47 18 72.31 65 16 33 4 89.19 37 17 39 15 72.22 54 18 39 16 70.91 55 19 46 17 73.02 63 20 41 10 80.39 51 21 41 7 85.42 48 22 49 15 76.56 64 23 42 11 79.25 53 24 48 12 80.00 60 25 48 16 75.00 64 26 38 17 69.09 55 27 35 22 61.40 57 28 55 14 79.71 69 29 40 15 72.73 55 30 36 16 69.23 52 31 43 15 74.14 58 32 42 17 71.19 59 33 38 12 76.00 50 34 47 16 74.60 63 35 36 17 67.92 53 36 51 8 86.44 59 37 36 9 80.00 45 38 49 15 76.56 64 39 39 17 69.64 56 40 40 13 75.47 53 41 47 8 85.45 55 42 38 13 74.51 51 43 39 14 73.58 53 44 31 12 72.09 43 45 30 17 63.83 47 46 37 9 80.43 46 47 35 10 77.78 45 48 41 13 75.93 54 49 23 13 63.89 36 50 27 10 72.97 37 51 27 14 65.85 41 52 30 13 69.77 43 53 36 6 85.71 42 54 32 10 76.19 42 55 32 5 86.49 37 56 34 16 68.00 50 57 29 9 76.32 38 58 22 7 75.86 29 59 29 13 69.05 42 60 31 11 73.81 42 61 30 17 63.83 47 62 24 12 66.67 36 63 34 2 94.44 36 64 27 11 71.05 38 65 24 8 75.00 32 66 26 10 72.22 36 67 36 9 80.00 45 68 30 3 90.91 33 69 16 8 66.67 24 70 26 12 68.42 38 71 15 8 65.22 23 72 26 10 72.22 36 73 21 5 80.77 26 74 21 6 77.78 27 75 13 8 61.90 21 76 17 3 85.00 20 77 27 2 93.10 29 78 11 4 73.33 15 79 14 3 82.35 17 80 7 1 87.50 8 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 89 0.00 89 2 1 96 1.03 97 3 2 107 1.83 109 4 1 91 1.09 92 5 3 111 2.63 114 6 2 101 1.94 103 7 2 111 1.77 113 8 1 107 0.93 108 9 0 97 0.00 97 10 0 104 0.00 104 11 0 104 0.00 104 12 1 98 1.01 99 13 2 95 2.06 97 14 2 112 1.75 114 15 2 96 2.04 98 16 0 82 0.00 82 17 4 112 3.45 116 18 0 100 0.00 100 19 2 115 1.71 117 20 0 83 0.00 83 21 2 108 1.82 110 22 1 89 1.11 90 23 2 102 1.92 104 24 3 97 3.00 100 25 2 90 2.17 92 26 1 78 1.27 79 27 1 105 0.94 106 28 1 93 1.06 94 29 2 93 2.11 95 30 0 110 0.00 110 31 1 92 1.08 93 32 2 101 1.94 103 33 0 86 0.00 86 34 1 77 1.28 78 35 0 96 0.00 96 36 0 81 0.00 81 37 2 92 2.13 94 38 1 76 1.30 77 39 0 96 0.00 96 40 0 82 0.00 82 41 2 92 2.13 94 42 2 78 2.50 80 43 0 77 0.00 77 44 2 75 2.60 77 45 1 69 1.43 70 46 1 66 1.49 67 47 0 83 0.00 83 48 1 53 1.85 54 49 4 68 5.56 72 50 1 61 1.61 62 51 0 67 0.00 67 52 0 74 0.00 74 53 2 68 2.86 70 54 0 59 0.00 59 55 0 75 0.00 75 56 1 72 1.37 73 57 2 54 3.57 56 58 0 75 0.00 75 59 0 61 0.00 61 60 0 61 0.00 61 61 0 69 0.00 69 62 0 53 0.00 53 63 2 51 3.77 53 64 1 59 1.67 60 65 0 56 0.00 56 66 1 49 2.00 50 67 0 46 0.00 46 68 0 42 0.00 42 69 1 54 1.82 55 70 0 42 0.00 42 71 0 52 0.00 52 72 0 43 0.00 43 73 0 47 0.00 47 74 0 49 0.00 49 75 0 48 0.00 48 76 0 44 0.00 44 77 1 33 2.94 34 78 0 38 0.00 38 79 1 27 3.57 28 80 0 13 0.00 13 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 286 2.72 294 2 11 282 3.75 293 3 5 289 1.70 294 4 4 265 1.49 269 5 5 258 1.90 263 6 10 263 3.66 273 7 5 252 1.95 257 8 4 251 1.57 255 9 6 258 2.27 264 10 5 259 1.89 264 11 3 228 1.30 231 12 3 253 1.17 256 13 7 231 2.94 238 14 9 221 3.91 230 15 9 253 3.44 262 16 8 269 2.89 277 17 4 257 1.53 261 18 7 275 2.48 282 19 5 267 1.84 272 20 9 225 3.85 234 21 2 241 0.82 243 22 3 248 1.20 251 23 4 251 1.57 255 24 5 264 1.86 269 25 1 262 0.38 263 26 5 238 2.06 243 27 3 242 1.22 245 28 3 260 1.14 263 29 4 266 1.48 270 30 3 250 1.19 253 31 8 244 3.17 252 32 1 255 0.39 256 33 5 248 1.98 253 34 3 269 1.10 272 35 5 243 2.02 248 36 7 261 2.61 268 37 6 219 2.67 225 38 5 220 2.22 225 39 2 213 0.93 215 40 1 238 0.42 239 41 3 232 1.28 235 42 3 230 1.29 233 43 6 234 2.50 240 44 3 208 1.42 211 45 4 223 1.76 227 46 3 218 1.36 221 47 1 209 0.48 210 48 4 215 1.83 219 49 4 223 1.76 227 50 4 204 1.92 208 51 2 187 1.06 189 52 1 215 0.46 216 53 6 185 3.14 191 54 1 195 0.51 196 55 0 208 0.00 208 56 2 172 1.15 174 57 1 159 0.62 160 58 6 171 3.39 177 59 2 172 1.15 174 60 3 167 1.76 170 61 3 176 1.68 179 62 3 165 1.79 168 63 1 156 0.64 157 64 0 156 0.00 156 65 3 166 1.78 169 66 1 149 0.67 150 67 0 144 0.00 144 68 2 151 1.31 153 69 0 135 0.00 135 70 2 131 1.50 133 71 3 126 2.33 129 72 1 134 0.74 135 73 0 132 0.00 132 74 3 135 2.17 138 75 2 123 1.60 125 76 2 142 1.39 144 77 0 126 0.00 126 78 2 118 1.67 120 79 0 98 0.00 98 80 0 41 0.00 41 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25 4 86.21 29 2 19 7 73.08 26 3 20 8 71.43 28 4 19 6 76.00 25 5 21 2 91.30 23 6 20 4 83.33 24 7 17 8 68.00 25 8 14 6 70.00 20 9 11 3 78.57 14 10 11 5 68.75 16 11 12 5 70.59 17 12 17 5 77.27 22 13 12 7 63.16 19 14 10 5 66.67 15 15 19 7 73.08 26 16 7 5 58.33 12 17 15 4 78.95 19 18 7 0 100.00 7 19 12 3 80.00 15 20 11 2 84.62 13 21 11 2 84.62 13 22 7 2 77.78 9 23 9 3 75.00 12 24 5 4 55.56 9 25 14 2 87.50 16 26 13 3 81.25 16 27 8 3 72.73 11 28 10 3 76.92 13 29 5 3 62.50 8 30 5 0 100.00 5 31 6 2 75.00 8 32 4 5 44.44 9 33 9 2 81.82 11 34 6 2 75.00 8 35 7 2 77.78 9 36 3 1 75.00 4 37 7 2 77.78 9 38 4 3 57.14 7 39 10 3 76.92 13 40 5 4 55.56 9 41 5 2 71.43 7 42 5 2 71.43 7 43 5 1 83.33 6 44 4 2 66.67 6 45 3 1 75.00 4 46 7 2 77.78 9 47 4 1 80.00 5 48 5 5 50.00 10 49 5 1 83.33 6 50 2 2 50.00 4 51 1 0 100.00 1 52 3 0 100.00 3 53 5 1 83.33 6 54 5 1 83.33 6 55 3 2 60.00 5 56 4 2 66.67 6 57 1 2 33.33 3 58 6 1 85.71 7 59 2 2 50.00 4 60 5 1 83.33 6 61 4 1 80.00 5 62 1 3 25.00 4 63 1 0 100.00 1 64 2 3 40.00 5 65 3 1 75.00 4 66 3 0 100.00 3 67 2 0 100.00 2 68 3 0 100.00 3 69 5 0 100.00 5 70 0 0 0 71 3 3 50.00 6 72 5 2 71.43 7 73 1 0 100.00 1 74 3 1 75.00 4 75 1 2 33.33 3 76 1 2 33.33 3 77 1 0 100.00 1 78 3 0 100.00 3 79 0 0 0 80 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 71 6.58 76 2 0 36 0.00 36 3 2 38 5.00 40 4 1 49 2.00 50 5 0 34 0.00 34 6 0 34 0.00 34 7 0 33 0.00 33 8 0 37 0.00 37 9 0 46 0.00 46 10 1 30 3.23 31 11 0 31 0.00 31 12 0 37 0.00 37 13 2 26 7.14 28 14 0 30 0.00 30 15 0 24 0.00 24 16 2 28 6.67 30 17 0 18 0.00 18 18 0 27 0.00 27 19 0 37 0.00 37 20 1 20 4.76 21 21 0 21 0.00 21 22 0 21 0.00 21 23 0 18 0.00 18 24 0 30 0.00 30 25 0 18 0.00 18 26 0 27 0.00 27 27 0 23 0.00 23 28 0 18 0.00 18 29 0 20 0.00 20 30 1 18 5.26 19 31 0 23 0.00 23 32 0 17 0.00 17 33 0 16 0.00 16 34 0 20 0.00 20 35 0 13 0.00 13 36 0 14 0.00 14 37 0 14 0.00 14 38 0 13 0.00 13 39 1 19 5.00 20 40 0 19 0.00 19 41 0 10 0.00 10 42 1 12 7.69 13 43 0 10 0.00 10 44 0 13 0.00 13 45 1 17 5.56 18 46 0 5 0.00 5 47 0 13 0.00 13 48 0 19 0.00 19 49 0 7 0.00 7 50 0 3 0.00 3 51 0 8 0.00 8 52 0 4 0.00 4 53 0 9 0.00 9 54 0 11 0.00 11 55 0 9 0.00 9 56 0 5 0.00 5 57 0 11 0.00 11 58 0 7 0.00 7 59 0 7 0.00 7 60 0 6 0.00 6 61 0 7 0.00 7 62 0 9 0.00 9 63 0 6 0.00 6 64 0 2 0.00 2 65 0 4 0.00 4 66 0 4 0.00 4 67 0 7 0.00 7 68 1 7 12.50 8 69 0 2 0.00 2 70 0 5 0.00 5 71 0 3 0.00 3 72 0 4 0.00 4 73 1 5 16.67 6 74 0 7 0.00 7 75 0 1 0.00 1 76 1 3 25.00 4 77 0 5 0.00 5 78 0 4 0.00 4 79 0 4 0.00 4 80 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 162 3.57 168 2 1 139 0.71 140 3 1 102 0.97 103 4 2 97 2.02 99 5 0 104 0.00 104 6 5 90 5.26 95 7 2 86 2.27 88 8 1 75 1.32 76 9 2 77 2.53 79 10 0 93 0.00 93 11 1 86 1.15 87 12 0 94 0.00 94 13 2 94 2.08 96 14 2 92 2.13 94 15 1 86 1.15 87 16 2 87 2.25 89 17 0 85 0.00 85 18 0 72 0.00 72 19 1 72 1.37 73 20 0 73 0.00 73 21 1 83 1.19 84 22 1 62 1.59 63 23 0 62 0.00 62 24 0 66 0.00 66 25 2 60 3.23 62 26 2 69 2.82 71 27 0 61 0.00 61 28 0 54 0.00 54 29 0 45 0.00 45 30 0 52 0.00 52 31 0 61 0.00 61 32 0 46 0.00 46 33 0 47 0.00 47 34 3 40 6.98 43 35 1 41 2.38 42 36 0 54 0.00 54 37 0 49 0.00 49 38 0 52 0.00 52 39 0 46 0.00 46 40 0 37 0.00 37 41 2 41 4.65 43 42 0 45 0.00 45 43 0 50 0.00 50 44 2 36 5.26 38 45 0 42 0.00 42 46 0 37 0.00 37 47 0 34 0.00 34 48 1 26 3.70 27 49 0 18 0.00 18 50 0 35 0.00 35 51 0 19 0.00 19 52 1 38 2.56 39 53 0 23 0.00 23 54 0 19 0.00 19 55 0 30 0.00 30 56 0 20 0.00 20 57 0 27 0.00 27 58 2 24 7.69 26 59 0 20 0.00 20 60 0 18 0.00 18 61 0 19 0.00 19 62 1 20 4.76 21 63 0 24 0.00 24 64 0 22 0.00 22 65 0 23 0.00 23 66 0 23 0.00 23 67 0 21 0.00 21 68 0 15 0.00 15 69 0 13 0.00 13 70 0 17 0.00 17 71 0 15 0.00 15 72 0 15 0.00 15 73 1 12 7.69 13 74 0 18 0.00 18 75 0 16 0.00 16 76 0 19 0.00 19 77 0 17 0.00 17 78 1 12 7.69 13 79 1 12 7.69 13 80 0 6 0.00 6