Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_4_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_4_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 2104
Pairs without alignments under any condition 6576
Pairs that did not map uniquely 1320
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 54440
Methylated C's in CpG context 5595
Methylated C's in CHG context 151
Methylated C's in CHH context 583
Methylated C's in Unknown context 7
Unmethylated C's in CpG context 1860
Unmethylated C's in CHG context 12403
Unmethylated C's in CHH context 33848
Unmethylated C's in Unknown context 27
Percentage methylation (CpG context) 75.1%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 525 original top strand
CTOT 529 complementary to original top strand
CTOB 508 complementary to original bottom strand
OB 542 original bottom strand