CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 56 12 82.35 68 2 55 10 84.62 65 3 67 7 90.54 74 4 55 15 78.57 70 5 53 14 79.10 67 6 64 6 91.43 70 7 48 12 80.00 60 8 48 8 85.71 56 9 62 7 89.86 69 10 59 16 78.67 75 11 68 10 87.18 78 12 51 13 79.69 64 13 53 5 91.38 58 14 53 11 82.81 64 15 58 12 82.86 70 16 61 21 74.39 82 17 43 9 82.69 52 18 55 12 82.09 67 19 66 16 80.49 82 20 57 16 78.08 73 21 57 8 87.69 65 22 52 12 81.25 64 23 64 18 78.05 82 24 62 6 91.18 68 25 51 16 76.12 67 26 63 10 86.30 73 27 57 11 83.82 68 28 49 8 85.96 57 29 53 7 88.33 60 30 80 15 84.21 95 31 57 10 85.07 67 32 45 10 81.82 55 33 68 6 91.89 74 34 54 9 85.71 63 35 47 12 79.66 59 36 60 10 85.71 70 37 55 13 80.88 68 38 52 9 85.25 61 39 61 10 85.92 71 40 69 7 90.79 76 41 42 4 91.30 46 42 49 13 79.03 62 43 60 8 88.24 68 44 46 12 79.31 58 45 42 5 89.36 47 46 52 11 82.54 63 47 53 8 86.89 61 48 48 5 90.57 53 49 45 4 91.84 49 50 50 8 86.21 58 51 40 4 90.91 44 52 45 3 93.75 48 53 46 10 82.14 56 54 35 4 89.74 39 55 44 8 84.62 52 56 43 13 76.79 56 57 30 7 81.08 37 58 38 4 90.48 42 59 44 6 88.00 50 60 31 6 83.78 37 61 37 7 84.09 44 62 40 10 80.00 50 63 41 4 91.11 45 64 36 8 81.82 44 65 33 6 84.62 39 66 40 6 86.96 46 67 39 12 76.47 51 68 26 9 74.29 35 69 39 7 84.78 46 70 22 7 75.86 29 71 36 9 80.00 45 72 27 5 84.38 32 73 28 5 84.85 33 74 29 4 87.88 33 75 34 8 80.95 42 76 30 3 90.91 33 77 35 4 89.74 39 78 19 4 82.61 23 79 18 2 90.00 20 80 7 3 70.00 10 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 104 1.89 106 2 3 100 2.91 103 3 0 96 0.00 96 4 1 100 0.99 101 5 1 86 1.15 87 6 1 100 0.99 101 7 1 106 0.93 107 8 0 100 0.00 100 9 1 128 0.78 129 10 1 88 1.12 89 11 2 93 2.11 95 12 0 94 0.00 94 13 3 112 2.61 115 14 0 113 0.00 113 15 0 107 0.00 107 16 0 111 0.00 111 17 3 106 2.75 109 18 3 103 2.83 106 19 1 95 1.04 96 20 0 104 0.00 104 21 3 102 2.86 105 22 2 112 1.75 114 23 0 87 0.00 87 24 1 111 0.89 112 25 3 98 2.97 101 26 2 98 2.00 100 27 0 122 0.00 122 28 2 91 2.15 93 29 2 111 1.77 113 30 1 102 0.97 103 31 1 93 1.06 94 32 1 107 0.93 108 33 5 99 4.81 104 34 1 109 0.91 110 35 1 100 0.99 101 36 1 105 0.94 106 37 2 90 2.17 92 38 1 75 1.32 76 39 2 110 1.79 112 40 3 107 2.73 110 41 2 102 1.92 104 42 1 101 0.98 102 43 1 90 1.10 91 44 1 88 1.12 89 45 0 78 0.00 78 46 0 90 0.00 90 47 2 81 2.41 83 48 0 97 0.00 97 49 2 89 2.20 91 50 1 81 1.22 82 51 1 87 1.14 88 52 1 60 1.64 61 53 3 65 4.41 68 54 1 83 1.19 84 55 0 79 0.00 79 56 2 68 2.86 70 57 1 80 1.23 81 58 1 96 1.03 97 59 0 69 0.00 69 60 1 85 1.16 86 61 1 64 1.54 65 62 2 64 3.03 66 63 2 71 2.74 73 64 0 73 0.00 73 65 0 58 0.00 58 66 0 63 0.00 63 67 0 68 0.00 68 68 1 56 1.75 57 69 0 59 0.00 59 70 0 55 0.00 55 71 1 53 1.85 54 72 0 59 0.00 59 73 2 43 4.44 45 74 1 63 1.56 64 75 0 54 0.00 54 76 0 51 0.00 51 77 0 38 0.00 38 78 1 47 2.08 48 79 0 32 0.00 32 80 1 16 5.88 17 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 298 1.32 302 2 12 271 4.24 283 3 4 277 1.42 281 4 6 292 2.01 298 5 6 286 2.05 292 6 1 262 0.38 263 7 8 249 3.11 257 8 3 252 1.18 255 9 4 245 1.61 249 10 5 291 1.69 296 11 6 271 2.17 277 12 9 295 2.96 304 13 4 275 1.43 279 14 5 263 1.87 268 15 3 265 1.12 268 16 4 253 1.56 257 17 7 274 2.49 281 18 5 273 1.80 278 19 3 264 1.12 267 20 4 283 1.39 287 21 5 273 1.80 278 22 5 249 1.97 254 23 3 263 1.13 266 24 3 275 1.08 278 25 2 261 0.76 263 26 3 256 1.16 259 27 5 238 2.06 243 28 3 260 1.14 263 29 3 253 1.17 256 30 4 237 1.66 241 31 7 256 2.66 263 32 8 266 2.92 274 33 2 257 0.77 259 34 4 241 1.63 245 35 3 243 1.22 246 36 2 242 0.82 244 37 5 264 1.86 269 38 4 269 1.47 273 39 4 239 1.65 243 40 3 255 1.16 258 41 6 253 2.32 259 42 5 246 1.99 251 43 3 250 1.19 253 44 3 264 1.12 267 45 3 243 1.22 246 46 1 231 0.43 232 47 5 256 1.92 261 48 3 230 1.29 233 49 4 228 1.72 232 50 3 256 1.16 259 51 0 223 0.00 223 52 5 206 2.37 211 53 3 187 1.58 190 54 2 201 0.99 203 55 3 192 1.54 195 56 1 206 0.48 207 57 4 173 2.26 177 58 3 194 1.52 197 59 4 189 2.07 193 60 1 199 0.50 200 61 1 181 0.55 182 62 2 198 1.00 200 63 3 172 1.71 175 64 1 181 0.55 182 65 1 168 0.59 169 66 1 146 0.68 147 67 2 167 1.18 169 68 2 162 1.22 164 69 1 163 0.61 164 70 5 159 3.05 164 71 5 172 2.82 177 72 1 134 0.74 135 73 2 135 1.46 137 74 4 139 2.80 143 75 0 139 0.00 139 76 1 131 0.76 132 77 3 117 2.50 120 78 0 136 0.00 136 79 3 93 3.12 96 80 1 40 2.44 41 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26 5 83.87 31 2 33 3 91.67 36 3 27 8 77.14 35 4 27 3 90.00 30 5 25 5 83.33 30 6 30 0 100.00 30 7 17 7 70.83 24 8 23 3 88.46 26 9 21 8 72.41 29 10 27 1 96.43 28 11 17 8 68.00 25 12 27 4 87.10 31 13 16 4 80.00 20 14 16 8 66.67 24 15 16 5 76.19 21 16 25 4 86.21 29 17 23 3 88.46 26 18 15 6 71.43 21 19 9 4 69.23 13 20 14 1 93.33 15 21 26 4 86.67 30 22 10 4 71.43 14 23 20 6 76.92 26 24 11 1 91.67 12 25 23 1 95.83 24 26 9 6 60.00 15 27 14 1 93.33 15 28 17 4 80.95 21 29 18 3 85.71 21 30 9 1 90.00 10 31 17 4 80.95 21 32 8 2 80.00 10 33 13 0 100.00 13 34 7 4 63.64 11 35 12 3 80.00 15 36 10 2 83.33 12 37 12 2 85.71 14 38 5 0 100.00 5 39 13 0 100.00 13 40 5 4 55.56 9 41 11 2 84.62 13 42 8 0 100.00 8 43 15 3 83.33 18 44 4 1 80.00 5 45 8 4 66.67 12 46 9 1 90.00 10 47 10 1 90.91 11 48 10 1 90.91 11 49 7 2 77.78 9 50 5 2 71.43 7 51 4 2 66.67 6 52 4 1 80.00 5 53 7 0 100.00 7 54 5 1 83.33 6 55 7 1 87.50 8 56 1 3 25.00 4 57 5 0 100.00 5 58 2 1 66.67 3 59 8 2 80.00 10 60 4 1 80.00 5 61 9 0 100.00 9 62 3 2 60.00 5 63 8 1 88.89 9 64 2 0 100.00 2 65 2 1 66.67 3 66 6 1 85.71 7 67 3 1 75.00 4 68 2 1 66.67 3 69 1 0 100.00 1 70 2 2 50.00 4 71 0 0 0 72 3 0 100.00 3 73 1 1 50.00 2 74 2 1 66.67 3 75 6 0 100.00 6 76 3 0 100.00 3 77 5 0 100.00 5 78 1 0 100.00 1 79 1 1 50.00 2 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 50 1.96 51 2 1 59 1.67 60 3 0 57 0.00 57 4 1 52 1.89 53 5 3 40 6.98 43 6 0 45 0.00 45 7 0 43 0.00 43 8 0 34 0.00 34 9 0 34 0.00 34 10 0 37 0.00 37 11 2 33 5.71 35 12 1 33 2.94 34 13 0 40 0.00 40 14 0 43 0.00 43 15 0 43 0.00 43 16 0 31 0.00 31 17 0 28 0.00 28 18 0 31 0.00 31 19 2 39 4.88 41 20 0 30 0.00 30 21 0 27 0.00 27 22 1 34 2.86 35 23 0 29 0.00 29 24 0 13 0.00 13 25 0 22 0.00 22 26 0 25 0.00 25 27 0 23 0.00 23 28 1 22 4.35 23 29 0 26 0.00 26 30 0 26 0.00 26 31 1 16 5.88 17 32 0 23 0.00 23 33 0 17 0.00 17 34 0 12 0.00 12 35 0 21 0.00 21 36 0 22 0.00 22 37 0 16 0.00 16 38 0 15 0.00 15 39 1 14 6.67 15 40 0 22 0.00 22 41 0 20 0.00 20 42 0 10 0.00 10 43 1 17 5.56 18 44 0 10 0.00 10 45 1 10 9.09 11 46 0 18 0.00 18 47 0 20 0.00 20 48 0 15 0.00 15 49 0 6 0.00 6 50 0 7 0.00 7 51 0 17 0.00 17 52 0 12 0.00 12 53 0 15 0.00 15 54 0 13 0.00 13 55 0 11 0.00 11 56 0 14 0.00 14 57 0 11 0.00 11 58 0 12 0.00 12 59 0 9 0.00 9 60 0 10 0.00 10 61 1 6 14.29 7 62 0 10 0.00 10 63 0 14 0.00 14 64 0 7 0.00 7 65 0 8 0.00 8 66 0 11 0.00 11 67 0 5 0.00 5 68 0 13 0.00 13 69 0 5 0.00 5 70 0 3 0.00 3 71 0 11 0.00 11 72 0 6 0.00 6 73 0 6 0.00 6 74 0 8 0.00 8 75 0 5 0.00 5 76 0 4 0.00 4 77 0 6 0.00 6 78 0 4 0.00 4 79 0 2 0.00 2 80 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 185 3.14 191 2 2 124 1.59 126 3 0 123 0.00 123 4 1 145 0.68 146 5 2 123 1.60 125 6 2 111 1.77 113 7 1 108 0.92 109 8 1 116 0.85 117 9 0 112 0.00 112 10 1 98 1.01 99 11 2 94 2.08 96 12 1 107 0.93 108 13 0 98 0.00 98 14 0 100 0.00 100 15 1 100 0.99 101 16 0 84 0.00 84 17 2 86 2.27 88 18 1 81 1.22 82 19 1 89 1.11 90 20 0 94 0.00 94 21 0 87 0.00 87 22 0 64 0.00 64 23 0 77 0.00 77 24 1 67 1.47 68 25 0 70 0.00 70 26 0 67 0.00 67 27 2 56 3.45 58 28 0 60 0.00 60 29 1 67 1.47 68 30 2 59 3.28 61 31 0 84 0.00 84 32 0 50 0.00 50 33 0 67 0.00 67 34 1 58 1.69 59 35 0 65 0.00 65 36 2 63 3.08 65 37 0 48 0.00 48 38 0 45 0.00 45 39 1 51 1.92 52 40 0 57 0.00 57 41 1 44 2.22 45 42 1 55 1.79 56 43 0 43 0.00 43 44 0 46 0.00 46 45 2 46 4.17 48 46 1 32 3.03 33 47 0 27 0.00 27 48 0 34 0.00 34 49 0 36 0.00 36 50 2 31 6.06 33 51 1 26 3.70 27 52 1 33 2.94 34 53 1 23 4.17 24 54 0 29 0.00 29 55 0 27 0.00 27 56 0 28 0.00 28 57 0 31 0.00 31 58 1 20 4.76 21 59 0 25 0.00 25 60 1 25 3.85 26 61 0 27 0.00 27 62 0 26 0.00 26 63 1 22 4.35 23 64 2 16 11.11 18 65 0 19 0.00 19 66 0 13 0.00 13 67 0 26 0.00 26 68 0 23 0.00 23 69 1 25 3.85 26 70 0 23 0.00 23 71 0 23 0.00 23 72 1 23 4.17 24 73 0 16 0.00 16 74 0 15 0.00 15 75 0 27 0.00 27 76 0 22 0.00 22 77 0 12 0.00 12 78 0 20 0.00 20 79 0 16 0.00 16 80 0 9 0.00 9