Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_3_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_3_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 2144
Pairs without alignments under any condition 6585
Pairs that did not map uniquely 1271
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 59368
Methylated C's in CpG context 7578
Methylated C's in CHG context 179
Methylated C's in CHH context 571
Methylated C's in Unknown context 7
Unmethylated C's in CpG context 1424
Unmethylated C's in CHG context 13694
Unmethylated C's in CHH context 35922
Unmethylated C's in Unknown context 43
Percentage methylation (CpG context) 84.2%
Percentage methylation (CHG context) 1.3%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 502 original top strand
CTOT 544 complementary to original top strand
CTOB 580 complementary to original bottom strand
OB 518 original bottom strand